Detailed information NTG0604268

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: NKZ80_RS11180
• Genome accession: NZ_CP100330
• Coordinates: 2233407..2234501 (+)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain STC85
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2228407..2239501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKZ80_RS11145 (NKZ80_11145)	-	2228679..2228849 (-)	171	WP_168800266.1	hypothetical protein	-
NKZ80_RS11150 (NKZ80_11150)	-	2229220..2229450 (-)	231	WP_024394571.1	hypothetical protein	-
NKZ80_RS11155 (NKZ80_11155)	-	2229547..2230167 (-)	621	WP_204101696.1	Rha family transcriptional regulator	-
NKZ80_RS11160 (NKZ80_11160)	-	2230181..2230408 (-)	228	WP_136581673.1	helix-turn-helix domain-containing protein	-
NKZ80_RS11165 (NKZ80_11165)	-	2230558..2231226 (+)	669	WP_239073412.1	helix-turn-helix domain-containing protein	-
NKZ80_RS11170 (NKZ80_11170)	-	2231717..2232883 (+)	1167	WP_136581674.1	site-specific integrase	-
NKZ80_RS11175 (NKZ80_11175)	yaaA	2233021..2233404 (+)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
NKZ80_RS11180 (NKZ80_11180)	recF	2233407..2234501 (+)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
NKZ80_RS11185 (NKZ80_11185)	guaB	2234770..2236251 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
NKZ80_RS11190 (NKZ80_11190)	trpS	2236483..2237508 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-
NKZ80_RS11195 (NKZ80_11195)	-	2237863..2238735 (+)	873	WP_013730698.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=604268 NKZ80_RS11180 WP_002936177.1 2233407..2234501(+) (recF) [Streptococcus suis strain STC85]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=604268 NKZ80_RS11180 WP_002936177.1 2233407..2234501(+) (recF) [Streptococcus suis strain STC85]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442