Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NKZ80_RS07355 Genome accession   NZ_CP100330
Coordinates   1485291..1485887 (-) Length   198 a.a.
NCBI ID   WP_014637682.1    Uniprot ID   A0AA96ZYK5
Organism   Streptococcus suis strain STC85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480291..1490887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS07335 (NKZ80_07335) - 1481939..1482607 (-) 669 WP_024388077.1 ABC transporter ATP-binding protein -
  NKZ80_RS07340 (NKZ80_07340) - 1482617..1483693 (-) 1077 WP_204101675.1 ABC transporter permease -
  NKZ80_RS07345 (NKZ80_07345) - 1483694..1484074 (-) 381 WP_044771770.1 OsmC family protein -
  NKZ80_RS07350 (NKZ80_07350) - 1484162..1485208 (-) 1047 WP_044756153.1 D-alanine--D-alanine ligase -
  NKZ80_RS07355 (NKZ80_07355) recR 1485291..1485887 (-) 597 WP_014637682.1 recombination mediator RecR Machinery gene
  NKZ80_RS07360 (NKZ80_07360) pbp2b 1485896..1487968 (-) 2073 WP_024376693.1 penicillin-binding protein PBP2B -
  NKZ80_RS07365 (NKZ80_07365) vga(F) 1488060..1489445 (-) 1386 WP_254369355.1 ABC-F type ribosomal protection protein Vga(F) -
  NKZ80_RS07370 (NKZ80_07370) vicX 1489703..1490506 (-) 804 WP_099807080.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=604236 NKZ80_RS07355 WP_014637682.1 1485291..1485887(-) (recR) [Streptococcus suis strain STC85]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=604236 NKZ80_RS07355 WP_014637682.1 1485291..1485887(-) (recR) [Streptococcus suis strain STC85]
ATGCTTTACCCTACACCTATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCCTGGCGGCTAAGAGAGATT
TGACCTATTGTTCCATTTGCGGCAATTTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATACCAGCCGTGACCAGTCG
ACCATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAATACCACGGTCTTTACCATGTCTT
GCATGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACCTTGTTAACTCGTCTAATGGAAA
ATGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGTGAAGCGACATCCATGTACATCTCACGTGTCCTA
AAGCCAGCAGGTATCAAGGTTACTCGCCTGGCAAGAGGATTGGCAGTCGGAAGTGACATTGAATACGCAGATGAAGTCAC
CCTCCTTCGTGCCATTGAGAACAGGACAGAACTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA96ZYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495