Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   K9C16_RS10935 Genome accession   NZ_CP082952
Coordinates   2284770..2285150 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl300     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279770..2290150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS10905 (K9C16_10860) tadA 2279887..2280391 (-) 505 Protein_2133 tRNA adenosine(34) deaminase TadA -
  K9C16_RS10910 (K9C16_10865) - 2280398..2281522 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  K9C16_RS10915 (K9C16_10870) ung 2281519..2282232 (-) 714 WP_029424376.1 uracil-DNA glycosylase -
  K9C16_RS10920 (K9C16_10875) - 2282283..2282879 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  K9C16_RS10925 (K9C16_10880) gspK 2283110..2284069 (-) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  K9C16_RS10930 (K9C16_10885) xcpW 2284069..2284770 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  K9C16_RS10935 (K9C16_10890) xcpV 2284770..2285150 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  K9C16_RS10940 (K9C16_10895) - 2285140..2285694 (-) 555 WP_005128793.1 type II secretion system protein -
  K9C16_RS10945 (K9C16_10900) - 2285704..2286312 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  K9C16_RS10950 (K9C16_10905) - 2286350..2287123 (-) 774 WP_000497295.1 TatD family hydrolase -
  K9C16_RS10955 (K9C16_10910) - 2287141..2287482 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  K9C16_RS10960 (K9C16_10915) - 2287494..2288474 (-) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  K9C16_RS10965 (K9C16_10920) kdsB 2288486..2289247 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=603882 K9C16_RS10935 WP_000836911.1 2284770..2285150(-) (xcpV) [Acinetobacter baumannii strain Cl300]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=603882 K9C16_RS10935 WP_000836911.1 2284770..2285150(-) (xcpV) [Acinetobacter baumannii strain Cl300]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1