NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	K9C16_RS10930	Genome accession	NZ_CP082952
Coordinates	2284069..2284770 (-)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain Cl300
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2279069..2289770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K9C16_RS10900 (K9C16_10855)	-	2279374..2279817 (-)	444	WP_001246675.1	SRPBCC family protein	-
K9C16_RS10905 (K9C16_10860)	tadA	2279887..2280391 (-)	505	Protein_2133	tRNA adenosine(34) deaminase TadA	-
K9C16_RS10910 (K9C16_10865)	-	2280398..2281522 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
K9C16_RS10915 (K9C16_10870)	ung	2281519..2282232 (-)	714	WP_029424376.1	uracil-DNA glycosylase	-
K9C16_RS10920 (K9C16_10875)	-	2282283..2282879 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
K9C16_RS10925 (K9C16_10880)	gspK	2283110..2284069 (-)	960	WP_029424377.1	type II secretion system minor pseudopilin GspK	-
K9C16_RS10930 (K9C16_10885)	xcpW	2284069..2284770 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
K9C16_RS10935 (K9C16_10890)	xcpV	2284770..2285150 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
K9C16_RS10940 (K9C16_10895)	-	2285140..2285694 (-)	555	WP_005128793.1	type II secretion system protein	-
K9C16_RS10945 (K9C16_10900)	-	2285704..2286312 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
K9C16_RS10950 (K9C16_10905)	-	2286350..2287123 (-)	774	WP_000497295.1	TatD family hydrolase	-
K9C16_RS10955 (K9C16_10910)	-	2287141..2287482 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
K9C16_RS10960 (K9C16_10915)	-	2287494..2288474 (-)	981	WP_001075409.1	DNA polymerase III subunit delta'	-
K9C16_RS10965 (K9C16_10920)	kdsB	2288486..2289247 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=603881 K9C16_RS10930 WP_000594589.1 2284069..2284770(-) (xcpW) [Acinetobacter baumannii strain Cl300]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=603881 K9C16_RS10930 WP_000594589.1 2284069..2284770(-) (xcpW) [Acinetobacter baumannii strain Cl300]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0603881