Detailed information NTG0603779

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NI383_RS18970
• Genome accession: NZ_CP099955
• Coordinates: 2332381..2333661 (-)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain Isc4A
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2327381..2338661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI383_RS18960 (NI383_19115)	-	2329433..2329705 (-)	273	WP_315868261.1	HU family DNA-binding protein	-
NI383_RS18965 (NI383_19120)	lon	2329898..2332249 (-)	2352	WP_131169080.1	endopeptidase La	-
NI383_RS18970 (NI383_19125)	clpX	2332381..2333661 (-)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
NI383_RS18975 (NI383_19130)	clpP	2333733..2334359 (-)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NI383_RS18980 (NI383_19135)	tig	2334465..2335769 (-)	1305	WP_005460612.1	trigger factor	-
NI383_RS18985 (NI383_19140)	-	2336063..2336248 (-)	186	WP_005482581.1	hypothetical protein	-
NI383_RS18990 (NI383_19145)	-	2336295..2338097 (+)	1803	WP_025791857.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=603779 NI383_RS18970 WP_005460618.1 2332381..2333661(-) (clpX) [Vibrio parahaemolyticus strain Isc4A]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=603779 NI383_RS18970 WP_005460618.1 2332381..2333661(-) (clpX) [Vibrio parahaemolyticus strain Isc4A]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACTC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAGGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCTCGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAAGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCTTACAAGTG
GACACGTCTAAGATCCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTTGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGAGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516