Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NI383_RS17000 Genome accession   NZ_CP099955
Coordinates   1883184..1884164 (+) Length   326 a.a.
NCBI ID   WP_315868194.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878184..1889164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS16980 (NI383_17135) - 1878542..1880152 (+) 1611 WP_315868193.1 peptide ABC transporter substrate-binding protein -
  NI383_RS16985 (NI383_17140) oppB 1880318..1881238 (+) 921 WP_046269155.1 oligopeptide ABC transporter permease OppB -
  NI383_RS16990 (NI383_17145) - 1881248..1882180 (+) 933 WP_017448602.1 ABC transporter permease subunit -
  NI383_RS16995 (NI383_17150) - 1882191..1883174 (+) 984 WP_069498019.1 ABC transporter ATP-binding protein -
  NI383_RS17000 (NI383_17155) amiE 1883184..1884164 (+) 981 WP_315868194.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  NI383_RS17005 (NI383_17160) - 1884174..1885970 (+) 1797 WP_315868195.1 aminopeptidase P family protein -
  NI383_RS17010 (NI383_17165) - 1886223..1888667 (-) 2445 WP_315868196.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36420.23 Da        Isoelectric Point: 8.3113

>NTDB_id=603764 NI383_RS17000 WP_315868194.1 1883184..1884164(+) (amiE) [Vibrio parahaemolyticus strain Isc4A]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLIEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=603764 NI383_RS17000 WP_315868194.1 1883184..1884164(+) (amiE) [Vibrio parahaemolyticus strain Isc4A]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCCCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTACTGCGCTTAATTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAGCCTCAACTTAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTAATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAGGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368