Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K8L98_RS21165 Genome accession   NZ_CP082944
Coordinates   4257588..4258229 (-) Length   213 a.a.
NCBI ID   WP_223437880.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4252588..4263229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS21145 (K8L98_21120) - 4254433..4254993 (-) 561 WP_223437872.1 GNAT family N-acetyltransferase -
  K8L98_RS21150 (K8L98_21125) - 4255062..4255451 (-) 390 WP_223437874.1 hotdog fold thioesterase -
  K8L98_RS21155 (K8L98_21130) - 4255465..4256523 (-) 1059 WP_223437876.1 PQQ-dependent sugar dehydrogenase -
  K8L98_RS21160 (K8L98_21135) - 4256814..4257500 (-) 687 WP_223437878.1 SIMPL domain-containing protein -
  K8L98_RS21165 (K8L98_21140) comA 4257588..4258229 (-) 642 WP_223437880.1 response regulator transcription factor Regulator
  K8L98_RS21170 (K8L98_21145) - 4258310..4260622 (-) 2313 WP_223437882.1 sensor histidine kinase -
  K8L98_RS21175 (K8L98_21150) comX 4260652..4260813 (-) 162 WP_223437884.1 competence pheromone ComX -
  K8L98_RS21180 (K8L98_21155) - 4260818..4261729 (-) 912 WP_223437886.1 polyprenyl synthetase family protein -
  K8L98_RS21185 (K8L98_21160) degQ 4261902..4262042 (-) 141 WP_101567816.1 degradation enzyme regulation protein DegQ Regulator
  K8L98_RS21190 (K8L98_21165) - 4262284..4262511 (-) 228 WP_223437888.1 hypothetical protein -
  K8L98_RS21195 (K8L98_21170) - 4262760..4263050 (+) 291 WP_223437890.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23957.38 Da        Isoelectric Point: 4.8942

>NTDB_id=603764 K8L98_RS21165 WP_223437880.1 4257588..4258229(-) (comA) [Metabacillus dongyingensis strain BY2G20]
MIHILVVDDHPAVREGTKAILETEPDVRVSCLNPPYSIDVIKHISFHEYDVVLMDMNLGDINGMELSTEIIKHSEDCKII
LYTGYDVEDYFEEAIRLGIHGAISKTETKEKILSSIRHVLSGDIVVPYTYLKSLILQQKMKSSSGSNDIEALNDREKAIL
QEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLNVGSRTEAVLISKSEGIID

Nucleotide


Download         Length: 642 bp        

>NTDB_id=603764 K8L98_RS21165 WP_223437880.1 4257588..4258229(-) (comA) [Metabacillus dongyingensis strain BY2G20]
ATGATACATATTTTAGTTGTGGATGATCATCCAGCAGTACGTGAGGGAACAAAAGCGATATTGGAAACAGAGCCGGATGT
CAGGGTATCCTGCTTAAATCCCCCTTATTCAATTGATGTTATTAAGCATATCAGCTTTCATGAATACGATGTTGTCCTGA
TGGATATGAATCTCGGAGATATTAATGGAATGGAGCTTTCCACAGAAATTATTAAGCACTCCGAGGATTGCAAGATTATT
CTGTATACAGGCTACGATGTAGAAGATTATTTTGAAGAGGCAATTCGCCTTGGGATTCACGGGGCGATCAGCAAAACAGA
GACAAAGGAAAAGATTCTTTCTTCCATTCGGCATGTTCTCTCAGGTGACATTGTTGTGCCGTATACCTACTTAAAATCTC
TCATTCTTCAGCAAAAAATGAAAAGCAGTTCCGGTTCAAATGATATAGAAGCATTGAATGATCGTGAGAAAGCCATACTG
CAAGAGGTTGAAAGAGGTCTGACGAACCAGGAGATTGCCGATAAGCTTCATTTAAGCAAGCGGTCAATTGAATACAGTTT
AACCTCTATTTTTAATAAATTAAATGTCGGTTCAAGAACAGAAGCTGTGTTAATTTCAAAGTCAGAAGGAATTATTGATT
AG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

64.019

100

0.643