Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   K8L98_RS21185 Genome accession   NZ_CP082944
Coordinates   4261902..4262042 (-) Length   46 a.a.
NCBI ID   WP_101567816.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4256902..4267042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS21165 (K8L98_21140) comA 4257588..4258229 (-) 642 WP_223437880.1 response regulator transcription factor Regulator
  K8L98_RS21170 (K8L98_21145) - 4258310..4260622 (-) 2313 WP_223437882.1 sensor histidine kinase -
  K8L98_RS21175 (K8L98_21150) comX 4260652..4260813 (-) 162 WP_223437884.1 competence pheromone ComX -
  K8L98_RS21180 (K8L98_21155) - 4260818..4261729 (-) 912 WP_223437886.1 polyprenyl synthetase family protein -
  K8L98_RS21185 (K8L98_21160) degQ 4261902..4262042 (-) 141 WP_101567816.1 degradation enzyme regulation protein DegQ Regulator
  K8L98_RS21190 (K8L98_21165) - 4262284..4262511 (-) 228 WP_223437888.1 hypothetical protein -
  K8L98_RS21195 (K8L98_21170) - 4262760..4263050 (+) 291 WP_223437890.1 hypothetical protein -
  K8L98_RS21200 (K8L98_21175) - 4263071..4265050 (-) 1980 WP_223437891.1 methyl-accepting chemotaxis protein -
  K8L98_RS21205 (K8L98_21180) - 4265139..4265747 (-) 609 WP_223437893.1 pyroglutamyl-peptidase I -
  K8L98_RS21210 (K8L98_21185) - 4265890..4266525 (-) 636 WP_223437895.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5568.43 Da        Isoelectric Point: 10.0051

>NTDB_id=603765 K8L98_RS21185 WP_101567816.1 4261902..4262042(-) (degQ) [Metabacillus dongyingensis strain BY2G20]
MKKHNIEEITQLLKRLEKEIQETKQSLRSINKSIDKYDKYSFINVS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=603765 K8L98_RS21185 WP_101567816.1 4261902..4262042(-) (degQ) [Metabacillus dongyingensis strain BY2G20]
ATGAAAAAGCACAACATTGAAGAAATAACTCAATTATTGAAACGTCTTGAGAAAGAAATTCAGGAAACGAAACAGTCACT
AAGATCAATTAATAAAAGCATTGATAAGTATGATAAATACTCCTTTATAAACGTGTCATAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

62.162

80.435

0.5