Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NI380_RS05940 Genome accession   NZ_CP099934
Coordinates   1267253..1267897 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain BM26A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262253..1272897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS05920 (NI380_05910) - 1262550..1262870 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  NI380_RS05925 (NI380_05915) yeiP 1262873..1263439 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  NI380_RS05930 (NI380_05920) - 1263626..1264393 (+) 768 WP_203528565.1 nucleotidyltransferase domain-containing protein -
  NI380_RS05935 (NI380_05925) - 1264390..1266753 (-) 2364 WP_203528563.1 DNA polymerase II -
  NI380_RS05940 (NI380_05930) letA 1267253..1267897 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NI380_RS05945 (NI380_05935) uvrC 1267899..1269731 (+) 1833 WP_025524659.1 excinuclease ABC subunit UvrC Machinery gene
  NI380_RS05950 (NI380_05940) pgsA 1269778..1270335 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=603686 NI380_RS05940 WP_005386783.1 1267253..1267897(+) (letA) [Vibrio parahaemolyticus strain BM26A]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=603686 NI380_RS05940 WP_005386783.1 1267253..1267897(+) (letA) [Vibrio parahaemolyticus strain BM26A]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTTAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAATTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5