Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K8U54_RS01850 Genome accession   NZ_CP082928
Coordinates   434815..435471 (-) Length   218 a.a.
NCBI ID   WP_249908623.1    Uniprot ID   -
Organism   Pseudomonas fulva strain ZJU1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429815..440471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8U54_RS01820 (K8U54_01815) murB 430910..431929 (-) 1020 WP_249908618.1 UDP-N-acetylmuramate dehydrogenase -
  K8U54_RS01825 (K8U54_01820) - 431926..432390 (-) 465 WP_249908619.1 low molecular weight protein-tyrosine-phosphatase -
  K8U54_RS01830 (K8U54_01825) kdsB 432390..433154 (-) 765 WP_249908620.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K8U54_RS01835 (K8U54_01830) - 433156..433341 (-) 186 WP_013791977.1 Trm112 family protein -
  K8U54_RS01840 (K8U54_01835) lpxK 433383..434390 (-) 1008 WP_249908621.1 tetraacyldisaccharide 4'-kinase -
  K8U54_RS01845 (K8U54_01840) - 434390..434818 (-) 429 WP_249908622.1 biopolymer transporter ExbD -
  K8U54_RS01850 (K8U54_01845) exbB 434815..435471 (-) 657 WP_249908623.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K8U54_RS01855 (K8U54_01850) comA 435544..437766 (-) 2223 WP_249908624.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K8U54_RS01860 (K8U54_01855) - 437888..439132 (-) 1245 WP_249908625.1 lipoprotein-releasing ABC transporter permease subunit -
  K8U54_RS01865 (K8U54_01860) lolD 439132..439836 (-) 705 WP_249908626.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23676.03 Da        Isoelectric Point: 8.5038

>NTDB_id=603646 K8U54_RS01850 WP_249908623.1 434815..435471(-) (exbB) [Pseudomonas fulva strain ZJU1]
MWELVKAGGWVMLPIILCSIAALGIIAERLWTLRVSRVTPPHLLGQVWRWIKDKQLNSQKLKELRADSPLGEILAAGLAN
SKYGREIMKECIEEAAARVVHEMERYLNALGTIAGITPLLGLLGTVIAMIDIFGSFMGGSTANPALLAGGIAKALITTAS
GLAVAIPALFFHRFLQRRVDELVIGMEQEAIKLVEMVQGERDVDLAEEPKPAKGSKKA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=603646 K8U54_RS01850 WP_249908623.1 434815..435471(-) (exbB) [Pseudomonas fulva strain ZJU1]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGGTGATGCTGCCGATCATTCTGTGTTCAATCGCTGCCCTGGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGCGTCAGCCGGGTCACGCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAGCTCAACAGCCAGAAACTCAAGGAACTGCGCGCCGATTCGCCACTGGGCGAGATCCTCGCGGCAGGCCTGGCCAAC
TCCAAGTACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCACGGGTGGTCCACGAGATGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGGCATCACGCCGCTGCTCGGCCTGCTCGGCACGGTGATCGCCATGATCGACATCTTCG
GCTCGTTCATGGGCGGCAGCACCGCCAACCCGGCGTTGCTCGCCGGCGGTATCGCCAAGGCGCTGATCACCACCGCATCG
GGCCTGGCCGTGGCGATTCCGGCGCTGTTCTTCCACCGTTTCCTGCAGCGCCGTGTCGATGAACTGGTGATCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAATGGTCCAGGGCGAGCGCGACGTCGACCTGGCCGAGGAGCCCAAGCCGGCCAAGG
GGAGCAAAAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.99

94.954

0.817