Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K8P05_RS07355 Genome accession   NZ_CP082874
Coordinates   1421275..1422045 (+) Length   256 a.a.
NCBI ID   WP_223416886.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1416275..1427045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS07340 (K8P05_07270) - 1417172..1419106 (-) 1935 WP_223416885.1 ribonuclease R family protein -
  K8P05_RS07345 (K8P05_07275) ilvC 1419229..1420251 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  K8P05_RS07350 (K8P05_07280) - 1420254..1421285 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  K8P05_RS07355 (K8P05_07285) dprA 1421275..1422045 (+) 771 WP_223416886.1 DNA-processing protein DprA Machinery gene
  K8P05_RS07360 (K8P05_07290) ruvX 1422042..1422422 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  K8P05_RS07365 (K8P05_07295) - 1422433..1423287 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  K8P05_RS07370 (K8P05_07300) msrA 1423510..1424010 (-) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  K8P05_RS07375 (K8P05_07305) ppa 1424058..1424576 (-) 519 WP_223416887.1 inorganic diphosphatase -
  K8P05_RS07380 (K8P05_07310) - 1424586..1425161 (-) 576 WP_223416888.1 adenylate kinase -
  K8P05_RS07385 (K8P05_07315) aspS 1425158..1426909 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28790.15 Da        Isoelectric Point: 4.9337

>NTDB_id=603298 K8P05_RS07355 WP_223416886.1 1421275..1422045(+) (dprA) [Campylobacter coli strain FDAARGOS_1466]
MQSELPSAYLELFKELTNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=603298 K8P05_RS07355 WP_223416886.1 1421275..1422045(+) (dprA) [Campylobacter coli strain FDAARGOS_1466]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGACAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.5

93.75

0.445