NTDB

Overview

Name	comL	Type	Machinery gene
Locus tag	K8P00_RS06140	Genome accession	NZ_CP082861
Coordinates	1219982..1220791 (-)	Length	269 a.a.
NCBI ID	WP_003822610.1	Uniprot ID	C0DTP2
Organism	Eikenella corrodens strain FDAARGOS_1474
Function	DNA processing; DNA transport into the cytoplasm (predicted from homology) DNA processing DNA binding and uptake

Genomic Context

Location: 1214982..1225791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8P00_RS06115 (K8P00_06075)	-	1215606..1216163 (-)	558	WP_003822619.1	RDD family protein	-
K8P00_RS06120 (K8P00_06080)	aroG	1216366..1217418 (-)	1053	WP_035580061.1	3-deoxy-7-phosphoheptulonate synthase AroG	-
K8P00_RS06125 (K8P00_06085)	-	1217693..1218469 (-)	777	WP_003822616.1	ferredoxin--NADP reductase	-
K8P00_RS06130 (K8P00_06090)	-	1218472..1219314 (-)	843	WP_003822613.1	J domain-containing protein	-
K8P00_RS06135 (K8P00_06095)	-	1219465..1219896 (-)	432	WP_035580057.1	DUF4124 domain-containing protein	-
K8P00_RS06140 (K8P00_06100)	comL	1219982..1220791 (-)	810	WP_003822610.1	outer membrane protein assembly factor BamD	Machinery gene
K8P00_RS06145 (K8P00_06105)	rluD	1220790..1221908 (+)	1119	WP_003822609.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K8P00_RS06150 (K8P00_06110)	thiL	1222179..1223165 (+)	987	WP_003822607.1	thiamine-phosphate kinase	-
K8P00_RS06155 (K8P00_06115)	-	1223158..1223661 (+)	504	WP_003822606.1	phosphatidylglycerophosphatase A	-
K8P00_RS06160 (K8P00_06120)	-	1223672..1224160 (+)	489	WP_003822605.1	DUF4279 domain-containing protein	-
K8P00_RS06165 (K8P00_06125)	-	1224258..1224842 (+)	585	WP_003822604.1	YhcB family protein	-
K8P00_RS06170 (K8P00_06130)	-	1224921..1225559 (-)	639	WP_003822603.1	tellurite resistance TerB family protein	-

Sequence

Protein

Download Length: 269 a.a. Molecular weight: 31311.39 Da Isoelectric Point: 8.9082

                                >NTDB_id=603209 K8P00_RS06140 WP_003822610.1 1219982..1220791(-) (comL) [Eikenella corrodens strain FDAARGOS_1474]

MKKILLVTGLAVMLSACSSTSTTAVSQDAQITQDWSVDKLYAEAHDEMESRNYSRSVRLYEILRARFPNTRQAVQSRLDT

AYVYYKDEQQPQALAHVEQFLKLYPNHPNTDYALYLKGLIVLNQDKSIFNKLASQDWSDRDPKANREAYQVFNELITRFP

DSKYANDAREKMARLVDALGGNEMAIARYYMQRGAYLAAANRAQGIVSRYQNTRYVEEALAIMMTAYARLEKPELSSDTR

RVLAQNFPQSPYLQKEWQPDDIPWWRYWK

Nucleotide

Download Length: 810 bp

                                >NTDB_id=603209 K8P00_RS06140 WP_003822610.1 1219982..1220791(-) (comL) [Eikenella corrodens strain FDAARGOS_1474]

ATGAAAAAGATTCTTTTAGTTACCGGCCTGGCAGTGATGCTGTCGGCCTGCTCCAGCACTTCAACCACCGCTGTGAGCCA

AGATGCCCAGATTACGCAGGATTGGTCGGTAGATAAGCTGTATGCCGAAGCGCACGATGAAATGGAGAGCCGCAATTATA

GCCGTTCGGTGCGTTTATATGAAATTTTGCGGGCGCGTTTCCCCAACACCCGCCAAGCGGTGCAATCGCGGCTGGATACG

GCTTATGTGTATTACAAAGACGAACAGCAGCCGCAGGCCTTGGCGCATGTGGAGCAGTTTTTGAAGCTGTATCCCAACCA

TCCGAACACCGATTACGCGCTGTATCTGAAGGGCTTGATTGTGCTCAATCAAGACAAATCCATCTTCAACAAGCTGGCCT

CGCAGGATTGGTCCGACCGCGACCCGAAAGCAAACCGCGAAGCCTATCAGGTGTTTAACGAGCTCATCACCCGCTTCCCC

GATAGCAAATACGCCAACGACGCGCGCGAAAAAATGGCGCGCCTGGTGGATGCCTTGGGCGGCAACGAAATGGCCATCGC

CCGCTACTACATGCAGCGCGGCGCGTACTTGGCCGCCGCCAACCGTGCACAGGGGATTGTGAGCCGCTATCAGAATACGC

GCTATGTGGAAGAGGCGCTGGCGATTATGATGACCGCCTATGCCCGTTTGGAAAAACCGGAGTTGAGCAGCGACACCCGC

CGCGTGCTAGCACAAAACTTCCCGCAGAGTCCCTATTTGCAGAAAGAATGGCAGCCGGACGATATTCCGTGGTGGCGCTA

TTGGAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1)

(1-18)

Outer membrane lipoprotein (YfiO)

(36-238)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	C0DTP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comL	Neisseria gonorrhoeae MS11	66.418	99.628	0.662
comL	Neisseria meningitidis MC58	66.045	99.628	0.658

Detailed information NTG0603209