Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   K8P04_RS04590 Genome accession   NZ_CP082856
Coordinates   914056..914352 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain FDAARGOS_1479     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 909056..919352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P04_RS04565 (K8P04_04535) - 909283..909846 (-) 564 WP_077643735.1 DNA-3-methyladenine glycosylase I -
  K8P04_RS04570 (K8P04_04540) aroE 910060..910866 (-) 807 WP_077643736.1 shikimate dehydrogenase -
  K8P04_RS04575 (K8P04_04545) - 910870..911421 (-) 552 WP_077643737.1 Sua5/YciO/YrdC/YwlC family protein -
  K8P04_RS04580 (K8P04_04550) - 911437..911973 (-) 537 WP_077643738.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K8P04_RS04585 (K8P04_04555) - 911983..913899 (-) 1917 WP_077643739.1 ABC transporter ATP-binding protein -
  K8P04_RS04590 (K8P04_04560) HI0659 914056..914352 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  K8P04_RS04595 (K8P04_04565) - 914345..914704 (-) 360 WP_077643740.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K8P04_RS04600 (K8P04_04570) - 914974..917241 (-) 2268 WP_223364827.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K8P04_RS09655 - 917443..917847 (-) 405 Protein_853 TonB-dependent receptor plug domain-containing protein -
  K8P04_RS04610 - 917798..917965 (-) 168 WP_396264522.1 PT domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=603090 K8P04_RS04590 WP_005650837.1 914056..914352(-) (HI0659) [Haemophilus influenzae strain FDAARGOS_1479]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=603090 K8P04_RS04590 WP_005650837.1 914056..914352(-) (HI0659) [Haemophilus influenzae strain FDAARGOS_1479]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTTCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1