Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8P04_RS04185 Genome accession   NZ_CP082856
Coordinates   840194..840847 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1479     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 835194..845847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P04_RS04160 (K8P04_04125) - 835670..836674 (-) 1005 WP_048954607.1 ornithine carbamoyltransferase -
  K8P04_RS04165 (K8P04_04130) - 837071..837889 (+) 819 WP_077643670.1 Cof-type HAD-IIB family hydrolase -
  K8P04_RS04170 (K8P04_04135) crcB 837889..838275 (+) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  K8P04_RS04175 (K8P04_04140) recX 838272..838730 (-) 459 WP_041175045.1 recombination regulator RecX -
  K8P04_RS04180 (K8P04_04145) recA 838810..839874 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K8P04_RS04185 (K8P04_04150) sxy/tfoX 840194..840847 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=603089 K8P04_RS04185 WP_005692773.1 840194..840847(+) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1479]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=603089 K8P04_RS04185 WP_005692773.1 840194..840847(+) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1479]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGCGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991