Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NIY03_RS17300 Genome accession   NZ_CP099855
Coordinates   3616963..3617598 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain 17978R     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3611963..3622598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS17280 (NIY03_17280) - 3612039..3612854 (+) 816 WP_000011166.1 DsbC family protein -
  NIY03_RS17285 (NIY03_17285) - 3613099..3614400 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  NIY03_RS17290 (NIY03_17290) thrC 3614456..3615595 (+) 1140 WP_000063593.1 threonine synthase -
  NIY03_RS17295 (NIY03_17295) pbpG 3615704..3616750 (-) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NIY03_RS17300 (NIY03_17300) letA 3616963..3617598 (+) 636 WP_000633799.1 response regulator Regulator
  NIY03_RS17305 (NIY03_17305) pilS 3617609..3619177 (+) 1569 WP_001160327.1 ATP-binding protein Regulator
  NIY03_RS17310 (NIY03_17310) - 3619202..3620623 (+) 1422 WP_049594865.1 sigma-54 dependent transcriptional regulator -
  NIY03_RS17315 (NIY03_17315) - 3620627..3621811 (-) 1185 WP_000939111.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=603069 NIY03_RS17300 WP_000633799.1 3616963..3617598(+) (letA) [Acinetobacter baumannii strain 17978R]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=603069 NIY03_RS17300 WP_000633799.1 3616963..3617598(+) (letA) [Acinetobacter baumannii strain 17978R]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACAAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55