Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   K8O89_RS04530 Genome accession   NZ_CP082852
Coordinates   1015829..1016248 (+) Length   139 a.a.
NCBI ID   WP_223499628.1    Uniprot ID   -
Organism   Legionella anisa strain FDAARGOS_1480     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010829..1021248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS04510 (K8O89_04515) - 1011267..1012769 (-) 1503 WP_058388701.1 glycosyltransferase family 39 protein -
  K8O89_RS04515 (K8O89_04520) - 1013100..1014389 (+) 1290 WP_019234246.1 hypothetical protein -
  K8O89_RS04520 (K8O89_04525) - 1014546..1015538 (+) 993 WP_019234245.1 polysaccharide deacetylase family protein -
  K8O89_RS04525 - 1015724..1015801 (+) 78 Protein_892 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K8O89_RS04530 (K8O89_04530) fimT 1015829..1016248 (+) 420 WP_223499628.1 GspH/FimT family protein Machinery gene
  K8O89_RS04535 (K8O89_04535) pilV 1016260..1016802 (+) 543 WP_019234243.1 type IV pilus modification protein PilV -
  K8O89_RS04540 (K8O89_04540) - 1016799..1017866 (+) 1068 WP_019234242.1 PilW family protein -
  K8O89_RS04545 (K8O89_04545) - 1017983..1018504 (+) 522 WP_051045716.1 pilus assembly protein -
  K8O89_RS04550 (K8O89_04550) pilE 1018514..1018939 (+) 426 WP_019234240.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14532.31 Da        Isoelectric Point: 7.6351

>NTDB_id=603040 K8O89_RS04530 WP_223499628.1 1015829..1016248(+) (fimT) [Legionella anisa strain FDAARGOS_1480]
MNNRLIAYTDMFVNALNYARNSALNGSMNVMVCPFGAVQSTTCGGNWSAGWIVVTQPTVGTSTLLKSQQLSPSDPVLSGN
GANVIFDSHGVTTTPSNFKFCDSRGGAFARSIAVLATGYVQSSTTPGQAVWDNSALTCP

Nucleotide


Download         Length: 420 bp        

>NTDB_id=603040 K8O89_RS04530 WP_223499628.1 1015829..1016248(+) (fimT) [Legionella anisa strain FDAARGOS_1480]
ATGAATAATCGCCTAATCGCTTATACAGATATGTTTGTGAATGCGCTTAATTATGCACGCAACAGCGCTCTTAATGGATC
AATGAACGTCATGGTTTGCCCCTTTGGGGCAGTACAATCCACCACGTGTGGCGGAAATTGGAGCGCCGGATGGATAGTAG
TAACCCAACCCACAGTAGGCACAAGCACCTTATTGAAAAGCCAACAACTCTCACCTTCAGATCCTGTCCTTTCAGGCAAC
GGTGCAAATGTAATTTTTGACTCTCATGGAGTGACTACTACCCCAAGTAATTTCAAATTTTGTGACAGCAGGGGTGGGGC
ATTTGCACGTTCTATTGCAGTGTTAGCCACTGGATATGTCCAATCAAGTACAACACCCGGACAAGCTGTTTGGGATAACA
GTGCACTTACATGCCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

61.151

100

0.612