Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   K8O97_RS05300 Genome accession   NZ_CP082848
Coordinates   1144552..1145001 (-) Length   149 a.a.
NCBI ID   WP_027224581.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139552..1150001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS05280 (K8O97_05275) - 1139825..1140217 (-) 393 WP_014843464.1 hypothetical protein -
  K8O97_RS05285 (K8O97_05280) - 1140354..1140731 (+) 378 WP_014841112.1 hypothetical protein -
  K8O97_RS05290 (K8O97_05285) - 1140932..1142239 (+) 1308 WP_014843465.1 tetratricopeptide repeat protein -
  K8O97_RS05295 (K8O97_05290) comEC 1142267..1144474 (-) 2208 WP_027224580.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K8O97_RS05300 (K8O97_05295) pilE 1144552..1145001 (-) 450 WP_027224581.1 type IV pilin protein Machinery gene
  K8O97_RS05305 (K8O97_05300) - 1145013..1148522 (-) 3510 WP_027224582.1 pilus assembly protein -
  K8O97_RS05310 (K8O97_05305) - 1148535..1149047 (-) 513 WP_027224583.1 pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16365.68 Da        Isoelectric Point: 8.1177

>NTDB_id=602966 K8O97_RS05300 WP_027224581.1 1144552..1145001(-) (pilE) [Legionella pneumophila strain FDAARGOS_1482]
MLRHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=602966 K8O97_RS05300 WP_027224581.1 1144552..1145001(-) (pilE) [Legionella pneumophila strain FDAARGOS_1482]
ATGCTCCGTCATGTACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCATTTCCTCAAACAACTCCGAACGGGTACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACTTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

99.329

100

0.993
  pilE Legionella pneumophila strain ERS1305867

99.329

100

0.993