Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8B78_RS11155 Genome accession   NZ_CP082815
Coordinates   2240693..2241088 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain SCAID WND1-2021 (598)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2235693..2246088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B78_RS11130 (K8B78_11130) thiE 2236154..2236795 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  K8B78_RS11135 (K8B78_11135) thiM 2236797..2237588 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  K8B78_RS11140 (K8B78_11140) thiD 2237572..2238402 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  K8B78_RS11145 (K8B78_11145) tenA 2238395..2239084 (-) 690 WP_000396068.1 thiaminase II -
  K8B78_RS11150 (K8B78_11150) sceD 2239609..2240304 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  K8B78_RS11155 (K8B78_11155) ssb 2240693..2241088 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  K8B78_RS11160 (K8B78_11160) - 2241282..2241722 (+) 441 WP_000846746.1 YwpF-like family protein -
  K8B78_RS11165 (K8B78_11165) fabZ 2241779..2242219 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K8B78_RS11170 (K8B78_11170) murA 2242253..2243518 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K8B78_RS11175 (K8B78_11175) - 2243629..2243862 (-) 234 WP_000384523.1 DUF1146 family protein -
  K8B78_RS11180 (K8B78_11180) - 2244741..2245145 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=602509 K8B78_RS11155 WP_000932696.1 2240693..2241088(-) (ssb) [Staphylococcus aureus strain SCAID WND1-2021 (598)]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=602509 K8B78_RS11155 WP_000932696.1 2240693..2241088(-) (ssb) [Staphylococcus aureus strain SCAID WND1-2021 (598)]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985