Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K3B00_RS08370 Genome accession   NZ_CP082789
Coordinates   1711068..1711754 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain HL24830     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706068..1716754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3B00_RS08350 (K3B00_001664) rpsT 1706982..1707233 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  K3B00_RS08355 (K3B00_001665) holA 1707278..1708252 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  K3B00_RS08360 (K3B00_001666) comEC 1708309..1710510 (-) 2202 WP_049308125.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3B00_RS08365 (K3B00_001667) - 1710515..1710976 (-) 462 WP_000439693.1 ComE operon protein 2 -
  K3B00_RS08370 (K3B00_001668) comEA 1711068..1711754 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  K3B00_RS08375 (K3B00_001669) - 1711794..1712510 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  K3B00_RS08380 (K3B00_001670) rsfS 1712513..1712866 (-) 354 WP_001088022.1 ribosome silencing factor -
  K3B00_RS08385 (K3B00_001671) yqeK 1712867..1713451 (-) 585 WP_001019323.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  K3B00_RS08390 (K3B00_001672) nadD 1713441..1714010 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  K3B00_RS08395 (K3B00_001673) yhbY 1714013..1714303 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  K3B00_RS08400 (K3B00_001674) aroE 1714307..1715113 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  K3B00_RS08405 (K3B00_001675) yqeH 1715127..1716227 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=602304 K3B00_RS08370 WP_001792568.1 1711068..1711754(-) (comEA) [Staphylococcus aureus strain HL24830]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=602304 K3B00_RS08370 WP_001792568.1 1711068..1711754(-) (comEA) [Staphylococcus aureus strain HL24830]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969