Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   K3B00_RS08130 Genome accession   NZ_CP082789
Coordinates   1664322..1664768 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL24830     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659322..1669768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3B00_RS08100 (K3B00_001614) gcvPA 1660248..1661594 (-) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  K3B00_RS08105 (K3B00_001615) gcvT 1661614..1662705 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  K3B00_RS08110 (K3B00_001616) - 1662864..1663388 (-) 525 WP_001015121.1 shikimate kinase -
  K3B00_RS08115 (K3B00_001617) - 1663378..1663524 (-) 147 WP_001789879.1 hypothetical protein -
  K3B00_RS08120 (K3B00_001618) comGF 1663621..1664118 (-) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  K3B00_RS08125 (K3B00_001619) comGE 1664036..1664335 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  K3B00_RS08130 (K3B00_001620) comGD 1664322..1664768 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  K3B00_RS08135 (K3B00_001621) comGC 1664746..1665057 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  K3B00_RS08140 (K3B00_001622) comGB 1665071..1666141 (-) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  K3B00_RS08145 (K3B00_001623) comGA 1666113..1667087 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  K3B00_RS08150 (K3B00_001624) - 1667139..1667762 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  K3B00_RS08155 (K3B00_001625) - 1667759..1668088 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  K3B00_RS08160 (K3B00_001626) - 1668088..1669074 (-) 987 WP_000161314.1 ROK family glucokinase -
  K3B00_RS08165 (K3B00_001627) - 1669071..1669274 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=602298 K3B00_RS08130 WP_001788899.1 1664322..1664768(-) (comGD) [Staphylococcus aureus strain HL24830]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=602298 K3B00_RS08130 WP_001788899.1 1664322..1664768(-) (comGD) [Staphylococcus aureus strain HL24830]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1