Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   K7G42_RS00835 Genome accession   NZ_CP082783
Coordinates   138521..139576 (+) Length   351 a.a.
NCBI ID   WP_152414240.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KRS02083     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133521..144576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS00825 (K7G42_00810) - 137240..137614 (+) 375 WP_003108753.1 DUF1033 family protein -
  K7G42_RS00830 (K7G42_00815) comYA 137668..138609 (+) 942 WP_003108751.1 competence type IV pilus ATPase ComGA Machinery gene
  K7G42_RS00835 (K7G42_00820) comYB 138521..139576 (+) 1056 WP_152414240.1 competence type IV pilus assembly protein ComGB Machinery gene
  K7G42_RS00840 (K7G42_00825) - 139653..141089 (-) 1437 WP_003108747.1 recombinase family protein -
  K7G42_RS00845 (K7G42_00830) - 141217..141606 (-) 390 WP_003108745.1 hypothetical protein -
  K7G42_RS00850 (K7G42_00835) - 141610..142038 (-) 429 WP_003108743.1 hypothetical protein -
  K7G42_RS00855 (K7G42_00840) - 142060..142650 (-) 591 WP_003108741.1 hypothetical protein -
  K7G42_RS00860 (K7G42_00845) - 142652..142825 (-) 174 WP_192813189.1 hypothetical protein -
  K7G42_RS00865 (K7G42_00850) - 142839..143528 (-) 690 WP_003108738.1 LexA family transcriptional regulator -
  K7G42_RS00870 (K7G42_00855) - 143797..144000 (+) 204 WP_003108729.1 helix-turn-helix domain-containing protein -
  K7G42_RS00875 (K7G42_00860) - 144037..144219 (+) 183 WP_003108726.1 hypothetical protein -
  K7G42_RS00880 (K7G42_00865) - 144294..144485 (+) 192 WP_003108723.1 hypothetical protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40401.42 Da        Isoelectric Point: 9.8078

>NTDB_id=602181 K7G42_RS00835 WP_152414240.1 138521..139576(+) (comYB) [Streptococcus parauberis strain KRS02083]
MKNGIKLLISWLQKDISLKKKGKKKRLSSKKQYQLIQLLHNLQASGFNLVEMVSFLKKSKLISEEQVKIMEFHMLNGSSL
SKIMLDLGYPDSIITQLSLAELHGNILGSLENIETYLLQVNHIKKKTFEVVMYPLVLLFFLTTILLGLRQYLLPSLNEEG
PLMFLLTYFPHLLIILIVIILFVSIVVIYKWRHSSPLKLISQISRLPLIGYVIQLYMTAFYAREWGNLLDQGLELSTILS
VMSKEKSLLVREIGIEMNSAFVEGIPFEQKVLDYPFFKNELSLIISYGQVKSKLGKELEIYSQNTWESYFRFLIQLTQLI
QPIVFLAVALIIVMIYAAMLLPIYQNMGGNL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=602181 K7G42_RS00835 WP_152414240.1 138521..139576(+) (comYB) [Streptococcus parauberis strain KRS02083]
ATGAAAAATGGAATCAAGCTATTGATCAGTTGGTTGCAAAAGGACATTTCCCTGAAGAAAAAGGGGAAAAAGAAAAGATT
ATCGAGTAAAAAACAATATCAACTTATCCAATTGTTACATAATCTCCAAGCAAGCGGATTTAATTTAGTTGAAATGGTAT
CTTTTCTGAAGAAAAGTAAATTAATATCTGAAGAGCAGGTTAAAATTATGGAATTTCACATGCTCAATGGCAGTAGTTTA
TCAAAAATCATGCTTGATTTAGGTTACCCAGATAGTATTATAACTCAATTGAGTTTAGCAGAATTACATGGGAATATTTT
GGGGAGTCTTGAAAATATAGAAACATACCTTTTGCAAGTGAATCATATTAAAAAGAAAACTTTCGAAGTGGTAATGTATC
CACTTGTATTACTATTTTTTCTAACAACTATACTACTTGGTTTGAGACAATATTTATTGCCTTCGCTTAATGAGGAAGGT
CCACTTATGTTCCTACTAACCTATTTTCCTCACCTTTTAATAATCCTAATTGTGATAATCCTCTTTGTCTCTATAGTAGT
TATTTATAAATGGCGACACAGTTCACCACTCAAGCTAATTAGCCAAATTAGTCGATTGCCTTTAATAGGATACGTCATCC
AGTTATATATGACAGCCTTCTATGCTCGAGAATGGGGAAATTTATTAGATCAGGGGCTTGAATTAAGTACGATTTTGTCT
GTTATGAGTAAGGAAAAATCACTTTTGGTACGGGAAATAGGTATAGAAATGAATAGTGCTTTTGTAGAGGGGATTCCGTT
TGAGCAAAAGGTACTAGATTATCCATTTTTTAAAAATGAATTGAGTTTAATTATTTCATATGGACAAGTTAAATCAAAAT
TAGGGAAGGAGTTAGAAATATATTCTCAAAATACATGGGAGTCTTACTTCAGGTTCCTCATACAACTTACTCAGCTGATT
CAACCAATTGTATTTTTAGCAGTTGCTCTAATTATTGTCATGATTTATGCAGCAATGCTATTGCCAATTTATCAAAATAT
GGGAGGAAATTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(36-154)

Type II secretion system (T2SS), protein F (T2SSF)

(222-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

51.304

98.291

0.504
  comYB Streptococcus mutans UA159

51.304

98.291

0.504
  comYB Streptococcus gordonii str. Challis substr. CH1

46.765

96.866

0.453
  comGB/cglB Streptococcus mitis NCTC 12261

46.471

96.866

0.45
  comGB/cglB Streptococcus mitis SK321

45.104

96.011

0.433
  comGB/cglB Streptococcus pneumoniae Rx1

44.807

96.011

0.43
  comGB/cglB Streptococcus pneumoniae D39

44.807

96.011

0.43
  comGB/cglB Streptococcus pneumoniae R6

44.807

96.011

0.43
  comGB/cglB Streptococcus pneumoniae TIGR4

44.807

96.011

0.43
  comGB Lactococcus lactis subsp. cremoris KW2

42.229

97.151

0.41