Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K6959_RS14780 Genome accession   NZ_CP082780
Coordinates   3037681..3038364 (-) Length   227 a.a.
NCBI ID   WP_163242784.1    Uniprot ID   A0A6B3W4H3
Organism   Bacillus aquiflavi strain 3H-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3032681..3043364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS14755 (K6959_14755) - 3032737..3033579 (-) 843 Protein_2976 DegV family protein -
  K6959_RS14760 (K6959_14760) dltD 3033867..3035045 (-) 1179 WP_163242179.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  K6959_RS14765 (K6959_14765) dltC 3035042..3035278 (-) 237 WP_163242178.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  K6959_RS14770 (K6959_14770) - 3035294..3035806 (-) 513 Protein_2979 MBOAT family O-acyltransferase -
  K6959_RS19320 - 3035837..3036115 (-) 279 WP_262421799.1 reverse transcriptase -
  K6959_RS19325 - 3036266..3036604 (-) 339 WP_262421800.1 reverse transcriptase domain-containing protein -
  K6959_RS19330 - 3036715..3036879 (-) 165 WP_246234996.1 reverse transcriptase domain-containing protein -
  K6959_RS19335 - 3036928..3037131 (-) 204 WP_246234998.1 hypothetical protein -
  K6959_RS14780 (K6959_14780) degU 3037681..3038364 (-) 684 WP_163242784.1 response regulator transcription factor Regulator
  K6959_RS14785 (K6959_14785) degS 3038451..3039581 (-) 1131 WP_163242769.1 sensor histidine kinase Regulator
  K6959_RS14790 (K6959_14790) - 3040188..3040823 (+) 636 WP_163242768.1 YigZ family protein -
  K6959_RS14795 (K6959_14795) - 3040902..3041906 (+) 1005 WP_223086878.1 LCP family protein -
  K6959_RS14800 (K6959_14800) - 3042009..3043115 (-) 1107 WP_223086879.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25494.11 Da        Isoelectric Point: 5.0216

>NTDB_id=602156 K6959_RS14780 WP_163242784.1 3037681..3038364(-) (degU) [Bacillus aquiflavi strain 3H-10]
MTKIAIIDDHQLFREGVKRILDFEKTFEVIAEGDDGSEAADLVEKYNPDVTIMDINMPNVNGVDATKEILERFPEAKVII
LSIHDDENYVMHSLKTGACGYLLKEMDADALIEAVQVVANGGSYLHPKITHNLVNEYRRLALESVGSGYNTFQQTEICRP
LHLLTRRECEVLQLLTDGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=602156 K6959_RS14780 WP_163242784.1 3037681..3038364(-) (degU) [Bacillus aquiflavi strain 3H-10]
ATTACAAAGATTGCTATTATTGATGATCATCAACTTTTCAGAGAAGGGGTTAAAAGAATTTTAGACTTTGAGAAAACCTT
CGAAGTAATCGCTGAAGGGGATGATGGTTCAGAAGCCGCCGATCTAGTTGAAAAATATAATCCAGATGTTACGATAATGG
ACATTAACATGCCTAATGTGAATGGCGTAGATGCCACAAAAGAAATATTGGAAAGATTCCCTGAAGCTAAAGTCATTATT
TTATCAATTCATGATGATGAAAATTATGTAATGCACTCATTGAAAACAGGTGCATGTGGTTATTTATTGAAGGAAATGGA
TGCGGATGCATTAATAGAAGCGGTTCAAGTAGTTGCGAATGGCGGCTCTTACTTACATCCAAAAATCACTCATAATTTAG
TCAATGAATATCGTCGCTTAGCGTTAGAATCAGTCGGGTCAGGGTACAATACTTTTCAACAAACTGAAATTTGCCGACCG
CTACATTTGCTAACTCGGCGAGAGTGTGAGGTTTTACAACTGTTGACCGATGGGAAAAGTAATCGGGGTATAGGAGAGGC
ACTATTCATTAGTGAAAAAACAGTGAAGAACCATGTAAGTAATATTTTACAAAAAATGAATGTAAATGACCGTACTCAAG
CTGTTGTAGTAGCCATTAAAAATGGCTGGGTCGAAGTTCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-218)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3W4H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

80.349

100

0.811