Detailed information    

insolico Bioinformatically predicted

Overview

Name   addA   Type   Machinery gene
Locus tag   K6959_RS03765 Genome accession   NZ_CP082780
Coordinates   744385..745656 (+) Length   423 a.a.
NCBI ID   WP_163243489.1    Uniprot ID   A0A6B3W0Q8
Organism   Bacillus aquiflavi strain 3H-10     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739385..750656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS03760 (K6959_03760) addB 740901..744416 (+) 3516 WP_223087670.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  K6959_RS03765 (K6959_03765) addA 744385..745656 (+) 1272 WP_163243489.1 UvrD-helicase domain-containing protein Machinery gene
  K6959_RS03770 (K6959_03770) addA 746347..748833 (+) 2487 Protein_741 helicase-exonuclease AddAB subunit AddA -
  K6959_RS03775 (K6959_03775) - 748974..749192 (-) 219 WP_163243505.1 spore germination protein -
  K6959_RS03780 (K6959_03780) - 749278..749643 (-) 366 WP_223087673.1 spore germination protein GerPE -
  K6959_RS03785 (K6959_03785) - 749645..749824 (-) 180 WP_163243503.1 spore gernimation protein GerPD -
  K6959_RS03790 (K6959_03790) gerPC 749805..750431 (-) 627 WP_163243502.1 spore germination protein GerPC -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 48318.54 Da        Isoelectric Point: 4.7989

>NTDB_id=602132 K6959_RS03765 WP_163243489.1 744385..745656(+) (addA) [Bacillus aquiflavi strain 3H-10]
MNEMNIPPKPSNVTWTDEQWKAITAQGRDILVAAAAGSGKTAVLVERIIRKITATEEPLDVDQLLVVTFTNAAAAEMRHR
IGEALEKEINHHPNSYHLRKQLGLLNRASISTVHSFCLEVIRKYYYLIDIDPGFRIADETEGQLLIDEVINELFEEQYGK
KDNEAFFALVETFTNDRSDEAMQKIVTELYEFARANPNPEQWLHSIVEMYNVDSSTSINDLPFIDTLLYQIDLQLKGAYR
LLKEAYELTKLPGGPAPRAETYLSDLQLVEHLINAHNDSWETLYNGMQTLAFSRAKACRGEDYDQTLVARAQQFRDQAKK
ILTDLQSDLFSRKPSSFIQDMREMSGHIQTLVNLVKTFSIRFNSVKKSKGLADFSDLEHYSLEILTANQLEDGTRQPSEA
ALFYQKQFKEVLVDEYQDSATRC

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=602132 K6959_RS03765 WP_163243489.1 744385..745656(+) (addA) [Bacillus aquiflavi strain 3H-10]
ATGAACGAAATGAACATACCGCCGAAGCCTAGTAATGTAACGTGGACAGATGAGCAATGGAAGGCGATTACCGCACAAGG
TCGGGACATTCTCGTTGCTGCTGCTGCCGGATCTGGGAAAACGGCTGTCCTCGTCGAAAGAATTATTCGTAAAATAACTG
CAACTGAAGAGCCGCTTGACGTAGATCAATTATTAGTCGTTACTTTTACAAACGCAGCCGCTGCAGAAATGAGGCATCGC
ATCGGAGAAGCTTTAGAAAAAGAGATTAATCATCATCCAAATTCATATCATTTACGAAAACAATTAGGCTTATTAAACCG
AGCGTCTATTTCTACTGTGCACTCCTTTTGTTTAGAGGTTATTAGAAAATATTATTATTTAATAGATATTGATCCTGGGT
TTCGGATTGCTGATGAGACGGAGGGGCAGCTATTAATAGACGAAGTAATAAATGAGTTATTTGAAGAGCAATATGGAAAA
AAAGATAATGAAGCTTTTTTTGCGCTTGTAGAAACGTTTACTAATGACAGAAGTGATGAAGCAATGCAAAAAATAGTGAC
TGAATTGTACGAGTTTGCTAGGGCAAATCCAAACCCAGAGCAATGGCTTCATTCAATTGTTGAGATGTATAATGTCGATT
CATCCACATCTATTAATGATTTACCTTTTATCGATACACTCTTATATCAAATTGATCTTCAACTAAAAGGTGCTTATCGT
CTTTTAAAGGAAGCATACGAATTAACGAAACTTCCCGGCGGACCAGCACCAAGAGCTGAAACGTATTTAAGTGATCTGCA
ATTAGTAGAACATTTAATAAATGCTCACAATGATTCATGGGAGACCCTTTATAACGGAATGCAAACATTAGCTTTTTCTC
GTGCAAAGGCATGTCGCGGTGAGGATTATGATCAAACTCTTGTTGCTCGGGCACAGCAATTTCGTGATCAGGCTAAAAAA
ATTTTAACTGATTTACAAAGTGATTTATTTTCTCGAAAGCCTAGCAGCTTTATCCAAGATATGAGGGAAATGAGCGGTCA
TATCCAAACGCTTGTTAATCTTGTAAAAACATTTTCGATTCGTTTTAATAGTGTCAAAAAATCAAAAGGTTTAGCTGACT
TTTCGGACTTGGAACATTATTCTTTAGAAATTTTAACCGCAAACCAATTAGAAGATGGAACACGCCAACCTTCAGAAGCA
GCACTTTTCTATCAAAAGCAATTTAAAGAAGTTCTTGTTGATGAGTATCAGGACAGTGCGACACGTTGCTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3W0Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

56.731

98.345

0.558