Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   JSY00_RS07995 Genome accession   NZ_CP082778
Coordinates   1625925..1626614 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620925..1631614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS07970 (JSY00_07970) - 1621395..1622108 (-) 714 Protein_1535 NADPH-dependent oxidoreductase -
  JSY00_RS07975 (JSY00_07975) dnaI 1622105..1623004 (-) 900 WP_202847525.1 primosomal protein DnaI -
  JSY00_RS07980 (JSY00_07980) - 1623004..1624155 (-) 1152 WP_044675055.1 replication initiation/membrane attachment protein -
  JSY00_RS07985 (JSY00_07985) nrdR 1624142..1624633 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  JSY00_RS07990 (JSY00_07990) - 1624705..1625835 (-) 1131 WP_044679901.1 AI-2E family transporter -
  JSY00_RS07995 (JSY00_07995) covR 1625925..1626614 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  JSY00_RS08000 (JSY00_08000) gndA 1626696..1628123 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  JSY00_RS08005 (JSY00_08005) - 1628220..1628759 (-) 540 WP_014736258.1 DUF177 domain-containing protein -
  JSY00_RS08010 (JSY00_08010) trxB 1628769..1629686 (-) 918 WP_044675053.1 thioredoxin-disulfide reductase -
  JSY00_RS08015 (JSY00_08015) - 1629700..1629924 (-) 225 WP_014638521.1 DUF4059 family protein -
  JSY00_RS08020 (JSY00_08020) - 1629942..1631285 (-) 1344 WP_024386748.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=602117 JSY00_RS07995 WP_012027645.1 1625925..1626614(-) (covR) [Streptococcus suis strain ID32098]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=602117 JSY00_RS07995 WP_012027645.1 1625925..1626614(-) (covR) [Streptococcus suis strain ID32098]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTTTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCAATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTAGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432