Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   JSY00_RS07835 Genome accession   NZ_CP082778
Coordinates   1596505..1598280 (-) Length   591 a.a.
NCBI ID   WP_044751788.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591505..1603280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS07810 (JSY00_07810) - 1591589..1592011 (+) 423 WP_012027608.1 membrane protein -
  JSY00_RS07815 (JSY00_07815) - 1592001..1593800 (+) 1800 WP_044681126.1 acyltransferase family protein -
  JSY00_RS07820 (JSY00_07820) - 1594024..1594677 (-) 654 WP_044681128.1 phosphatase PAP2 family protein -
  JSY00_RS07825 (JSY00_07825) - 1594702..1595259 (-) 558 WP_024388277.1 ECF transporter S component -
  JSY00_RS07830 (JSY00_07830) - 1595583..1596128 (-) 546 WP_014736238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  JSY00_RS07835 (JSY00_07835) oppA 1596505..1598280 (-) 1776 WP_044751788.1 oligopeptide ABC transporter substrate-binding protein Regulator
  JSY00_RS07840 (JSY00_07840) yidD 1598711..1598950 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  JSY00_RS07845 (JSY00_07845) - 1598950..1599681 (-) 732 WP_012027615.1 pseudouridine synthase -
  JSY00_RS07850 (JSY00_07850) scpB 1599671..1600240 (-) 570 WP_044753724.1 SMC-Scp complex subunit ScpB -
  JSY00_RS07855 (JSY00_07855) - 1600224..1600943 (-) 720 WP_002942755.1 segregation/condensation protein A -
  JSY00_RS07860 (JSY00_07860) xerD 1600943..1601674 (-) 732 WP_044675068.1 site-specific tyrosine recombinase XerD -
  JSY00_RS07865 (JSY00_07865) cbpB 1601671..1602129 (-) 459 WP_044675067.1 cyclic-di-AMP-binding protein CbpB -
  JSY00_RS07870 (JSY00_07870) - 1602126..1602653 (-) 528 WP_044667561.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65428.13 Da        Isoelectric Point: 4.2604

>NTDB_id=602116 JSY00_RS07835 WP_044751788.1 1596505..1598280(-) (oppA) [Streptococcus suis strain ID32098]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDAARKLDDSGLAKAEFDVEAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNIV
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDSMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAA

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=602116 JSY00_RS07835 WP_044751788.1 1596505..1598280(-) (oppA) [Streptococcus suis strain ID32098]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCATGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATCGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAGTTATCGCAAACGGCAGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATGCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGAGGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGACGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCGTT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCCAACGAGTACTACTTTAAAGGGAAAGTCAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTTTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAGAAACTTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACAGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCAACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGCATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(101-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.43

100

0.657