Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LPT20_RS05140 Genome accession   NZ_CP099504
Coordinates   1072144..1072740 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain S36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067144..1077740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS05135 (LPT20_05135) - 1071840..1071936 (-) 97 Protein_1004 hypothetical protein -
  LPT20_RS05140 (LPT20_05140) recR 1072144..1072740 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  LPT20_RS05145 (LPT20_05145) - 1072747..1073064 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  LPT20_RS05150 (LPT20_05150) dnaX 1073154..1074851 (-) 1698 WP_001109053.1 DNA polymerase III subunit gamma/tau -
  LPT20_RS05155 (LPT20_05155) - 1074920..1075444 (-) 525 WP_001167833.1 N-acetyltransferase -
  LPT20_RS05160 (LPT20_05160) - 1075583..1075683 (-) 101 Protein_1009 hypothetical protein -
  LPT20_RS05170 (LPT20_05170) treR 1076084..1076812 (-) 729 WP_000977612.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=601904 LPT20_RS05140 WP_000559156.1 1072144..1072740(-) (recR) [Staphylococcus aureus strain S36]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=601904 LPT20_RS05140 WP_000559156.1 1072144..1072740(-) (recR) [Staphylococcus aureus strain S36]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAAGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475