Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LPT17_RS09380 Genome accession   NZ_CP099502
Coordinates   1924953..1926065 (-) Length   370 a.a.
NCBI ID   WP_000775118.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919953..1931065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT17_RS09370 (LPT17_09370) gyrA 1920303..1922972 (-) 2670 WP_000819080.1 DNA gyrase subunit A -
  LPT17_RS09375 (LPT17_09375) gyrB 1923009..1924943 (-) 1935 WP_000255581.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LPT17_RS09380 (LPT17_09380) recF 1924953..1926065 (-) 1113 WP_000775118.1 DNA replication/repair protein RecF Machinery gene
  LPT17_RS09385 (LPT17_09385) yaaA 1926062..1926307 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LPT17_RS09390 (LPT17_09390) dnaN 1926688..1927821 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  LPT17_RS09395 (LPT17_09395) dnaA 1928099..1929460 (-) 1362 WP_001290435.1 chromosomal replication initiator protein DnaA -
  LPT17_RS09400 (LPT17_09400) rpmH 1930191..1930328 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  LPT17_RS09405 (LPT17_09405) rnpA 1930448..1930801 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42459.48 Da        Isoelectric Point: 6.4362

>NTDB_id=601848 LPT17_RS09380 WP_000775118.1 1924953..1926065(-) (recF) [Staphylococcus aureus strain JL42]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSIDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=601848 LPT17_RS09380 WP_000775118.1 1924953..1926065(-) (recF) [Staphylococcus aureus strain JL42]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAACGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCTATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTAT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497