Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K7T73_RS17935 Genome accession   NZ_CP082363
Coordinates   3427250..3427930 (-) Length   226 a.a.
NCBI ID   WP_041095107.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422250..3432930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS17905 (K7T73_17880) - 3422279..3422518 (-) 240 WP_041095097.1 ferredoxin -
  K7T73_RS17910 (K7T73_17885) - 3422560..3423585 (-) 1026 WP_223662141.1 NAD(P)/FAD-dependent oxidoreductase -
  K7T73_RS17915 (K7T73_17890) paaK 3423621..3424949 (-) 1329 WP_063384653.1 phenylacetate--CoA ligase PaaK -
  K7T73_RS17920 (K7T73_17895) - 3425378..3425839 (+) 462 WP_349774400.1 hotdog fold thioesterase -
  K7T73_RS17925 (K7T73_17900) - 3425922..3426392 (-) 471 WP_063384652.1 S-ribosylhomocysteine lyase -
  K7T73_RS17930 (K7T73_17905) - 3426509..3427060 (-) 552 WP_063384651.1 hypothetical protein -
  K7T73_RS17935 (K7T73_17910) degU 3427250..3427930 (-) 681 WP_041095107.1 response regulator transcription factor Regulator
  K7T73_RS17940 (K7T73_17915) degS 3427956..3429110 (-) 1155 WP_041095109.1 histidine kinase Regulator
  K7T73_RS17945 (K7T73_17920) - 3429587..3429736 (+) 150 WP_223662142.1 hypothetical protein -
  K7T73_RS17950 (K7T73_17925) - 3429740..3430381 (+) 642 WP_063384650.1 YigZ family protein -
  K7T73_RS17955 (K7T73_17930) - 3430514..3431494 (+) 981 WP_063384649.1 LCP family protein -
  K7T73_RS17960 (K7T73_17935) - 3431585..3432634 (-) 1050 WP_041095113.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25594.20 Da        Isoelectric Point: 5.5920

>NTDB_id=601836 K7T73_RS17935 WP_041095107.1 3427250..3427930(-) (degU) [Bacillus badius strain NBPM-293]
MTTKIVIIDDHQLFREGVKRILEFEESFEVVAEGDDGRDALALIEEHHPDVVLMDINMPEVNGVEATRELVQKFQDTKVI
ILSIHDDENYVTHALKSGAMGYLLKEMDADALIEAVKVVSEGGSYLHPRVTHNLIADYRRLANDDQKGKGFQQTEVRRPL
HLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKKGWVEVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=601836 K7T73_RS17935 WP_041095107.1 3427250..3427930(-) (degU) [Bacillus badius strain NBPM-293]
ATGACAACGAAAATCGTTATTATTGATGATCATCAATTATTCCGCGAAGGAGTAAAGCGGATTTTAGAATTTGAAGAGTC
CTTTGAGGTAGTAGCTGAGGGAGATGACGGAAGAGACGCGCTTGCGCTTATCGAAGAGCATCATCCCGATGTGGTGCTTA
TGGACATCAACATGCCGGAAGTAAATGGTGTAGAAGCCACGCGTGAGCTAGTGCAAAAGTTCCAGGATACAAAAGTCATC
ATCCTTTCTATTCATGACGATGAAAATTATGTCACGCATGCTTTAAAGTCAGGCGCTATGGGTTACTTATTAAAAGAAAT
GGATGCAGATGCTTTAATCGAAGCGGTTAAAGTGGTGTCTGAGGGCGGTTCTTACTTGCATCCGCGTGTAACACACAATC
TGATCGCAGATTATCGCCGGCTTGCTAATGATGACCAAAAAGGAAAAGGCTTCCAACAAACAGAAGTGCGCCGGCCGCTT
CATTTGCTTACTCGGCGTGAATGTGAGGTTCTGCAGCTTCTGGCTGACGGAAAGAGCAACCGCGCCATTGGGGAAGCGCT
CTATATTAGTGAAAAAACAGTAAAGAACCATGTTAGCAATATCCTGCAAAAAATGAATGTAAATGACCGTACTCAAGCCG
TTGTGACCGCGATTAAAAAAGGCTGGGTCGAAGTCAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

76.339

99.115

0.757
  vraR Staphylococcus aureus N315

37.333

99.558

0.372