Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K7T73_RS12140 Genome accession   NZ_CP082363
Coordinates   2381272..2382981 (-) Length   569 a.a.
NCBI ID   WP_041113295.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2376272..2387981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS12115 (K7T73_12100) - 2376925..2377161 (+) 237 WP_063385591.1 DUF2627 domain-containing protein -
  K7T73_RS12120 (K7T73_12105) - 2377213..2377947 (-) 735 WP_063385590.1 glycerophosphodiester phosphodiesterase -
  K7T73_RS12125 (K7T73_12110) spo0A 2378039..2378827 (-) 789 WP_223661675.1 sporulation transcription factor Spo0A Regulator
  K7T73_RS12130 (K7T73_12115) spoIVB 2379043..2380185 (-) 1143 Protein_2339 SpoIVB peptidase -
  K7T73_RS12135 (K7T73_12120) - 2380446..2381135 (-) 690 WP_063385587.1 MgtC/SapB family protein -
  K7T73_RS12140 (K7T73_12125) recN 2381272..2382981 (-) 1710 WP_041113295.1 DNA repair protein RecN Machinery gene
  K7T73_RS12145 (K7T73_12130) argR 2382999..2383448 (-) 450 WP_063385585.1 transcriptional regulator AhrC/ArgR -
  K7T73_RS12150 (K7T73_12135) - 2383654..2384496 (-) 843 WP_063385584.1 TlyA family RNA methyltransferase -
  K7T73_RS12155 (K7T73_12140) dxs 2384500..2386392 (-) 1893 WP_063385583.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K7T73_RS12160 (K7T73_12145) - 2386621..2387505 (-) 885 WP_063385582.1 polyprenyl synthetase family protein -
  K7T73_RS12165 (K7T73_12150) xseB 2387508..2387735 (-) 228 WP_041097151.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63887.60 Da        Isoelectric Point: 4.9652

>NTDB_id=601824 K7T73_RS12140 WP_041113295.1 2381272..2382981(-) (recN) [Bacillus badius strain NBPM-293]
MLQELSIRNFAIIEELHVSLEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSSEFVRHGEKKAEIEGMFQIDSPNHACLQK
AQEFGIEAEEETIIIRREISVSGKSVCRINGKLVTIAILREIGSTLVDIHGQHEHQELMDASQHLRLLDHFGGTEVLAAK
ESYADVYKRYEQTAKALSQLSENEQQMAHRLDLLQFQLSEIQKADLQLHEDEELMEEKRKLSNFEKLYESVQNAANALQG
EGRGLDWIGLAMAQLEAAAEIDESYKAAYEAVSESFYVLEDAARHAGSALDSLEFDPNRLNIIEARLNEINQLKRKYGSS
IEEILEYGAKIEEEIDTLTNRETHIEKLSNELSAYEKDLLLEGQQLSQLRRKTAEKLTDAIHQELKQLYMDKTVFRIQFE
AFTEKEGLRSKPFKRDGLDEVEFYISTNPGEPVKPLSKVASGGELSRIMLAMKTIFSEHQGITSIIFDEVDTGVSGRVAQ
AIGEKIYEVAVHSQVLCISHLPQVAAMADTHLYISKMMKAGRTKTVVEPLENQEKIREIGRMISGVEMTDLTKQHAKELL
DLAASLKKK

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=601824 K7T73_RS12140 WP_041113295.1 2381272..2382981(-) (recN) [Bacillus badius strain NBPM-293]
TTGCTACAGGAACTGTCCATACGCAACTTTGCGATCATAGAAGAACTCCATGTCTCGCTGGAAAAAGGGCTGACGGTGCT
TACCGGTGAAACGGGGGCAGGGAAGTCAATTATTATTGATGCTGTTCATCTGCTTGTCGGCGGCCGCGGATCGTCTGAGT
TTGTCCGCCACGGAGAGAAGAAGGCTGAAATTGAAGGGATGTTTCAAATTGACAGCCCGAACCATGCTTGCCTCCAAAAA
GCGCAGGAATTCGGCATTGAGGCGGAGGAGGAAACCATTATCATTCGCCGGGAGATTTCCGTCAGCGGCAAGAGCGTCTG
CCGCATCAACGGCAAGCTCGTCACTATTGCTATTTTGCGCGAAATCGGCTCTACTCTCGTAGATATTCATGGCCAGCATG
AGCATCAAGAGCTAATGGACGCGAGCCAGCATTTGCGTCTGCTTGATCATTTTGGCGGAACAGAAGTATTGGCGGCAAAG
GAAAGCTATGCTGACGTTTATAAACGATATGAACAAACGGCTAAAGCGCTCAGCCAGCTAAGCGAAAACGAACAACAAAT
GGCCCACCGGCTCGATTTGCTGCAGTTTCAGCTGTCTGAAATTCAAAAGGCTGACCTGCAGCTTCATGAAGATGAGGAGC
TGATGGAGGAAAAGAGAAAGCTGAGCAACTTTGAGAAGCTGTACGAATCTGTTCAAAATGCGGCCAATGCATTGCAGGGA
GAAGGGCGAGGGCTGGATTGGATCGGACTGGCCATGGCTCAGCTGGAAGCGGCAGCTGAAATTGACGAGTCGTATAAAGC
AGCTTATGAAGCTGTATCTGAAAGCTTCTATGTGCTTGAGGATGCAGCCCGCCATGCAGGCTCAGCGTTAGATAGCCTGG
AGTTTGATCCGAATCGCCTCAATATCATTGAAGCAAGGTTAAACGAGATTAACCAGCTGAAAAGAAAGTATGGCAGCTCA
ATTGAAGAGATTTTAGAGTATGGGGCAAAAATTGAAGAAGAAATTGATACATTGACTAATCGGGAAACGCATATTGAGAA
ATTATCTAATGAACTTTCTGCTTATGAAAAAGATTTGCTGCTTGAAGGCCAGCAGCTCAGCCAGTTAAGACGAAAAACAG
CTGAGAAGCTGACAGATGCTATCCATCAAGAGCTCAAGCAGCTTTATATGGATAAAACGGTCTTTCGGATACAGTTTGAA
GCCTTCACCGAGAAAGAGGGCTTGCGGTCAAAGCCATTTAAACGGGATGGGCTTGATGAGGTCGAGTTTTATATTTCAAC
GAACCCCGGCGAGCCCGTTAAACCTCTGTCGAAAGTGGCTTCTGGCGGAGAACTGTCGCGAATCATGCTGGCCATGAAGA
CCATTTTTTCTGAACATCAAGGCATCACTTCAATCATCTTTGACGAGGTAGACACAGGAGTCAGCGGCCGGGTGGCGCAA
GCAATCGGCGAGAAGATTTATGAGGTGGCTGTTCATTCGCAGGTGCTTTGTATCTCCCACTTGCCGCAGGTAGCTGCCAT
GGCTGATACTCATTTGTACATTTCAAAAATGATGAAGGCCGGCCGGACGAAAACAGTGGTCGAACCGCTGGAAAATCAGG
AGAAGATCCGGGAAATTGGCCGGATGATTTCTGGCGTGGAAATGACGGATTTAACGAAGCAGCATGCGAAAGAGCTGCTT
GATCTCGCTGCTTCGCTAAAGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.195

100

0.627