Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   K7T73_RS12125 Genome accession   NZ_CP082363
Coordinates   2378039..2378827 (-) Length   262 a.a.
NCBI ID   WP_223661675.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2373039..2383827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS12100 (K7T73_12085) - 2373070..2373465 (-) 396 WP_063385594.1 hypothetical protein -
  K7T73_RS12105 (K7T73_12090) bcd 2373487..2374587 (-) 1101 WP_063385593.1 branched-chain amino acid dehydrogenase -
  K7T73_RS12110 (K7T73_12095) - 2374738..2376792 (-) 2055 WP_223661674.1 sigma-54-dependent Fis family transcriptional regulator -
  K7T73_RS12115 (K7T73_12100) - 2376925..2377161 (+) 237 WP_063385591.1 DUF2627 domain-containing protein -
  K7T73_RS12120 (K7T73_12105) - 2377213..2377947 (-) 735 WP_063385590.1 glycerophosphodiester phosphodiesterase -
  K7T73_RS12125 (K7T73_12110) spo0A 2378039..2378827 (-) 789 WP_223661675.1 sporulation transcription factor Spo0A Regulator
  K7T73_RS12130 (K7T73_12115) spoIVB 2379043..2380185 (-) 1143 Protein_2339 SpoIVB peptidase -
  K7T73_RS12135 (K7T73_12120) - 2380446..2381135 (-) 690 WP_063385587.1 MgtC/SapB family protein -
  K7T73_RS12140 (K7T73_12125) recN 2381272..2382981 (-) 1710 WP_041113295.1 DNA repair protein RecN Machinery gene
  K7T73_RS12145 (K7T73_12130) argR 2382999..2383448 (-) 450 WP_063385585.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29422.02 Da        Isoelectric Point: 5.6778

>NTDB_id=601823 K7T73_RS12125 WP_223661675.1 2378039..2378827(-) (spo0A) [Bacillus badius strain NBPM-293]
MTKIKVAIVDDNRDLVKMLEEYISSQEDMEVTGSANNGQDCLEMLPDAKPDVLILDIIMPHVDGLAVLERMRELDLETFP
NVIMLTAFGQEDVTKKAVELGASYFMLKPFDMESLFSHIRQVSGKENSMMRRSSQETLKQPAKKTVNLDASITSIIHEIG
VPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMTKA
KPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=601823 K7T73_RS12125 WP_223661675.1 2378039..2378827(-) (spo0A) [Bacillus badius strain NBPM-293]
ATGACTAAAATAAAAGTAGCAATCGTAGATGATAATCGGGATCTGGTAAAAATGCTGGAAGAATATATTTCTTCACAAGA
GGACATGGAAGTGACAGGCAGTGCCAACAATGGCCAGGATTGTTTAGAAATGCTCCCGGACGCAAAGCCTGATGTGCTTA
TTCTGGATATTATTATGCCTCACGTTGATGGGCTGGCGGTTCTGGAAAGAATGCGCGAGCTTGATCTTGAAACCTTTCCG
AATGTTATTATGCTCACAGCTTTCGGCCAAGAGGATGTCACGAAAAAGGCAGTGGAACTCGGCGCTTCTTATTTCATGTT
AAAGCCTTTCGATATGGAAAGCCTTTTCAGCCACATTCGCCAGGTGAGCGGAAAAGAAAATTCCATGATGCGGCGTTCAT
CGCAGGAAACGTTGAAGCAGCCGGCAAAGAAAACCGTCAATCTCGACGCCAGCATTACAAGCATTATTCATGAGATCGGT
GTTCCCGCTCACATTAAAGGATATATGTACTTGCGAGAGGCCATATCGATGGTTTATAACGATATTGAATTGCTCGGTTC
CATTACGAAAGTTCTTTATCCAGACATTGCTAAAAAATACAACACTACTGCCAGCCGTGTAGAACGGGCCATTCGTCATG
CAATTGAAGTGGCATGGAGCCGCGGCAATATCGACTCTATTTCCAGCTTATTCGGCTACACGGTCTCCATGACAAAAGCA
AAACCCACGAATTCAGAATTCATTGCGATGGTCGCTGATAAGCTGAGACTTGAACATAAAGCTTCTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(152-255)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

79.026

100

0.805