Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CHBNTHi_RS03355 | Genome accession | NZ_AP018781 |
| Coordinates | 663992..664405 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q5D8D6 |
| Organism | Haemophilus influenzae strain CHBN-V-1 isolate 13H43 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 658992..669405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHBNTHi_RS03335 (CHBNV1_06310) | - | 659480..662074 (-) | 2595 | WP_110437668.1 | penicillin-binding protein 1A | - |
| CHBNTHi_RS03340 (CHBNV1_06320) | comA | 662173..662970 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CHBNTHi_RS03345 (CHBNV1_06330) | comB | 662971..663477 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CHBNTHi_RS03350 (CHBNV1_06340) | comC | 663474..663995 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| CHBNTHi_RS03355 (CHBNV1_06350) | comD | 663992..664405 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| CHBNTHi_RS03360 (CHBNV1_06360) | comE | 664415..665752 (+) | 1338 | WP_110437669.1 | type IV pilus secretin PilQ | Machinery gene |
| CHBNTHi_RS03365 (CHBNV1_06370) | - | 665765..666451 (+) | 687 | WP_110437670.1 | ComF family protein | - |
| CHBNTHi_RS03370 (CHBNV1_06380) | nfuA | 666527..667123 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CHBNTHi_RS03375 (CHBNV1_06390) | nudC | 667190..667984 (+) | 795 | WP_110437671.1 | NAD(+) diphosphatase | - |
| CHBNTHi_RS03380 (CHBNV1_06400) | - | 668020..668610 (+) | 591 | WP_110437672.1 | YjaG family protein | - |
| CHBNTHi_RS03385 (CHBNV1_06410) | - | 668751..669023 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=60167 CHBNTHi_RS03355 WP_011272047.1 663992..664405(+) (comD) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=60167 CHBNTHi_RS03355 WP_011272047.1 663992..664405(+) (comD) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |