Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K7G97_RS16450 Genome accession   NZ_CP082333
Coordinates   3197317..3197835 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain EYLC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3192317..3202835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G97_RS16430 (K7G97_16430) dnaB 3193110..3194462 (-) 1353 WP_023469846.1 replicative DNA helicase -
  K7G97_RS16435 (K7G97_16435) rplI 3194482..3194925 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  K7G97_RS16440 (K7G97_16440) - 3194922..3196907 (-) 1986 WP_223041085.1 DHH family phosphoesterase -
  K7G97_RS16445 (K7G97_16445) rpsR 3197042..3197272 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  K7G97_RS16450 (K7G97_16450) ssb 3197317..3197835 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  K7G97_RS16455 (K7G97_16455) rpsF 3197859..3198146 (-) 288 WP_058704734.1 30S ribosomal protein S6 -
  K7G97_RS16460 (K7G97_16460) ychF 3198267..3199367 (-) 1101 WP_023469852.1 redox-regulated ATPase YchF -
  K7G97_RS16465 (K7G97_16465) - 3199596..3199784 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  K7G97_RS16470 (K7G97_16470) - 3199756..3200685 (-) 930 WP_050678887.1 mechanosensitive ion channel family protein -
  K7G97_RS16475 (K7G97_16475) yyaC 3200859..3201485 (+) 627 WP_023469855.1 spore protease YyaC -
  K7G97_RS16480 (K7G97_16480) - 3201523..3202287 (-) 765 WP_035395440.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=601567 K7G97_RS16450 WP_023469850.1 3197317..3197835(-) (ssb) [Exiguobacterium acetylicum strain EYLC1]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=601567 K7G97_RS16450 WP_023469850.1 3197317..3197835(-) (ssb) [Exiguobacterium acetylicum strain EYLC1]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAAGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCTACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCATTCAGCGGCGGT
AGTTCGATCGACCTTTCAGACGACGATCTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547