Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   K6806_RS14340 Genome accession   NZ_CP082319
Coordinates   2989487..2990503 (-) Length   338 a.a.
NCBI ID   WP_033907304.1    Uniprot ID   A0AAW9B902
Organism   Vibrio alginolyticus strain XWV9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2984487..2995503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS14315 (K6806_14205) aroK 2985360..2985878 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K6806_RS14320 (K6806_14210) pilQ 2986066..2987811 (-) 1746 WP_053307551.1 type IV pilus secretin PilQ family protein Machinery gene
  K6806_RS14325 (K6806_14215) pilP 2987837..2988352 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  K6806_RS14330 (K6806_14220) pilO 2988342..2988935 (-) 594 WP_005381322.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6806_RS14335 (K6806_14225) pilN 2988928..2989503 (-) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  K6806_RS14340 (K6806_14230) pilM 2989487..2990503 (-) 1017 WP_033907304.1 type IV pilus assembly protein PilM Machinery gene
  K6806_RS14345 (K6806_14235) - 2990648..2993209 (+) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -
  K6806_RS14350 (K6806_14240) oxyR 2993262..2994173 (-) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -
  K6806_RS14355 (K6806_14245) - 2994343..2995071 (+) 729 WP_005382781.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37538.89 Da        Isoelectric Point: 6.9770

>NTDB_id=601440 K6806_RS14340 WP_033907304.1 2989487..2990503(-) (pilM) [Vibrio alginolyticus strain XWV9]
MDKLIVTGIDIGHNSLKAVVLKPTGNNYALLGYKEILLKEGIVAENNTINHQEIVKTLKQIKKELPFGAKKVAISVPDNS
VISKKLQIEQNLEESEVEFAVIQAFSHQSPFPVEELSLDFVRLLAEGGQSGSDSYQVFATRKDVVEGRVDALQKSGLKPV
LVDVHSQSLGHIWKLTADRFPDKNKYCLLDIGTLSSSFTMFTEQGELFHKEFAYGTRGANSASPVDFLSDDAQEKTELFN
RQIVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSQQLSLECELLNPLGLFEMKVSKRKRRAVDWQHFSTAA
GLAVRGIHWLGGARALSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=601440 K6806_RS14340 WP_033907304.1 2989487..2990503(-) (pilM) [Vibrio alginolyticus strain XWV9]
ATGGATAAGCTAATCGTTACCGGCATCGATATAGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCACAGGCAACAA
TTACGCTCTGTTGGGTTACAAAGAAATATTACTAAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTCAAGCAGATAAAAAAAGAACTGCCTTTTGGCGCTAAAAAAGTTGCGATTTCAGTTCCTGATAACTCG
GTAATTAGCAAGAAACTGCAAATAGAACAAAATCTTGAAGAGAGTGAAGTTGAGTTTGCAGTGATACAAGCCTTTTCTCA
TCAATCGCCATTCCCTGTCGAAGAGCTGAGTTTAGACTTCGTTCGTCTTCTCGCGGAGGGCGGGCAGAGTGGCAGTGATA
GCTATCAAGTGTTTGCGACAAGAAAAGATGTGGTAGAAGGCCGAGTCGATGCATTACAAAAGTCCGGACTAAAACCTGTT
TTAGTGGACGTGCATTCGCAAAGCCTTGGTCATATCTGGAAGCTCACCGCCGATCGCTTTCCTGACAAAAACAAATACTG
CTTACTCGATATTGGCACCTTATCGAGCTCCTTCACCATGTTTACCGAACAAGGTGAACTGTTTCACAAAGAGTTTGCTT
ACGGCACACGCGGAGCAAACAGCGCTTCTCCAGTCGATTTTCTGTCCGATGATGCTCAGGAGAAAACAGAGCTGTTTAAC
CGTCAAATCGTAGAGCGAGTAAAGCGCCAGATGCAGCTCTATACCTCAATCAATGGCTCACAAAATATCAAGGGTATCTG
GTTATCAGGGGAAGGGGCCTCCACTCCCATGCTCGCAGAGGAGTTGTCTCAACAATTGTCGTTAGAGTGTGAATTGCTAA
ATCCGCTAGGGCTATTTGAGATGAAGGTGTCTAAGCGTAAGCGTCGCGCTGTGGATTGGCAGCATTTCTCAACAGCAGCC
GGACTGGCCGTTCGTGGCATTCATTGGCTAGGAGGCGCCCGTGCTTTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

83.136

100

0.831
  pilM Vibrio cholerae strain A1552

50.746

99.112

0.503