Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K6806_RS14325 Genome accession   NZ_CP082319
Coordinates   2987837..2988352 (-) Length   171 a.a.
NCBI ID   WP_005382766.1    Uniprot ID   A0A2I3CBC3
Organism   Vibrio alginolyticus strain XWV9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2982837..2993352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS14310 (K6806_14200) aroB 2984227..2985327 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  K6806_RS14315 (K6806_14205) aroK 2985360..2985878 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K6806_RS14320 (K6806_14210) pilQ 2986066..2987811 (-) 1746 WP_053307551.1 type IV pilus secretin PilQ family protein Machinery gene
  K6806_RS14325 (K6806_14215) pilP 2987837..2988352 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  K6806_RS14330 (K6806_14220) pilO 2988342..2988935 (-) 594 WP_005381322.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6806_RS14335 (K6806_14225) pilN 2988928..2989503 (-) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  K6806_RS14340 (K6806_14230) pilM 2989487..2990503 (-) 1017 WP_033907304.1 type IV pilus assembly protein PilM Machinery gene
  K6806_RS14345 (K6806_14235) - 2990648..2993209 (+) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19065.24 Da        Isoelectric Point: 10.4342

>NTDB_id=601437 K6806_RS14325 WP_005382766.1 2987837..2988352(-) (pilP) [Vibrio alginolyticus strain XWV9]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=601437 K6806_RS14325 WP_005382766.1 2987837..2988352(-) (pilP) [Vibrio alginolyticus strain XWV9]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACTATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTACTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.977

100

0.573