Detailed information NTG0601438

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: NC516_RS00975
• Genome accession: NZ_CP099485
• Coordinates: 204026..206149 (+)
• Length: 707 a.a.
• NCBI ID: WP_056936442.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain WiKim0095
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 199026..211149

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NC516_RS00955 (NC516_00955)	-	199584..200591 (+)	1008	WP_252814937.1	LacI family DNA-binding transcriptional regulator	-
NC516_RS00960 (NC516_00960)	-	200735..201289 (+)	555	WP_011373914.1	PadR family transcriptional regulator	-
NC516_RS00965 (NC516_00965)	-	201286..202845 (+)	1560	WP_011373915.1	MFS transporter	-
NC516_RS00970 (NC516_00970)	-	202941..203630 (+)	690	WP_011373916.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
NC516_RS00975 (NC516_00975)	clpE	204026..206149 (+)	2124	WP_056936442.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
NC516_RS00980 (NC516_00980)	-	206185..206721 (+)	537	WP_016264496.1	DUF308 domain-containing protein	-
NC516_RS00985 (NC516_00985)	-	206778..207395 (-)	618	WP_025016106.1	DUF1361 domain-containing protein	-
NC516_RS00990 (NC516_00990)	-	207592..208584 (+)	993	WP_025016105.1	choloylglycine hydrolase family protein	-
NC516_RS00995 (NC516_00995)	-	208847..210319 (+)	1473	WP_157826318.1	BspA family leucine-rich repeat surface protein	-
NC516_RS01000 (NC516_01000)	-	210482..211126 (+)	645	WP_252814938.1	isopeptide-forming domain-containing fimbrial protein	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78213.62 Da
• Isoelectric Point: 4.7412

>NTDB_id=601438 NC516_RS00975 WP_056936442.1 204026..206149(+) (clpE) [Latilactobacillus sakei strain WiKim0095]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPEAIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSAQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAAAVEAENYQAAEELKVKIEKIKAQLATDDQHAAEVIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide

• Length: 2124 bp

>NTDB_id=601438 NC516_RS00975 WP_056936442.1 204026..206149(+) (clpE) [Latilactobacillus sakei strain WiKim0095]
ATGGCAAATATGTACGGAAATGATCCTTTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTCAGAAGAATGGG
TAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACATGCCCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAAGAAGCACGGGATGGTTTATTAGATCCTGTGATTGGCCGGTATAATGAAATTCAAGAAAC
AGCTGAAATATTGAGTCGCCGGACTAAAAATAATCCCATTCTAGTTGGGGATGCAGGTGTTGGGAAGACCGCAGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGGAAAGTACCCGAAGCCATTAAGGATAAAGAAATCTATTCAATCGATTTGTCC
TCACTAGAAGCTGGGACACAATATCGTGGTTCATTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
CAATGTTATTCTCTTTTTCGACGAAATTCATCAAATTTTAGGGATTGGTTCAACTGGTGGCGAAGATGGCGGCAAAGGGT
TAGCCGATATTATCAAGCCAGCTTTATCACGTGGTGAGTTGACGGTCATCGGTGCGACAACCCAAGATGAATATCGCAAC
ACAATTTTGAAAAATGCCGCATTAGCAAGACGATTTAACGATGTGCTGGTCAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTACAGGGGATTAAAGGCTTGTATGAAAAACACCATCACATTGAACTACCAGATGACGTTTTGAAGGCGGCCGTTG
ACTATTCTGCTCAATATATTCCACAACGGACGTTGCCTGACAAGGCAATCGATTTATTAGATATGACTGCGGCTCATTTA
GCAGCTAAACGCCCAGAAACAGATAAAGCTAAATTGGCGGCTGAACTTAAACAATTAGAAGCTGATAAAGCCGCAGCTGT
CGAAGCTGAAAATTATCAAGCTGCTGAAGAGCTAAAAGTTAAAATTGAAAAAATTAAAGCGCAATTGGCAACCGATGATC
AGCATGCGGCAGAAGTGATTGCGACTGTTGATGATATTGCACAATCTGTTGAAAGATTAACTGGGATTCCCGTTGCCAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGCCAACGCTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCGCGGGCTATTCGCAGAAATCGGGCAGGTTTTTCGGAAGGTAATCAACCAATTGGGAGCTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATTGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCGAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACCAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAGGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (262-359)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA domain (Cdc48 subfamily) (AAA_2) (446-605)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (613-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	49.922	90.099	0.45
clpC	Lactococcus lactis subsp. cremoris KW2	48.973	89.533	0.438
clpE	Streptococcus pneumoniae TIGR4	47.596	88.26	0.42
clpE	Streptococcus pneumoniae Rx1	47.504	87.836	0.417
clpE	Streptococcus pneumoniae D39	47.504	87.836	0.417
clpE	Streptococcus pneumoniae R6	47.504	87.836	0.417
clpC	Streptococcus pneumoniae Rx1	43.694	94.201	0.412
clpC	Streptococcus pneumoniae D39	43.694	94.201	0.412
clpC	Streptococcus pneumoniae TIGR4	43.981	91.655	0.403
clpC	Bacillus subtilis subsp. subtilis str. 168	45.208	88.543	0.4
clpC	Streptococcus thermophilus LMD-9	44.911	87.553	0.393
clpC	Streptococcus thermophilus LMG 18311	44.426	87.553	0.389
clpC	Streptococcus mutans UA159	44.175	87.412	0.386
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.224	87.836	0.362