Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K6806_RS14330 Genome accession   NZ_CP082319
Coordinates   2988342..2988935 (-) Length   197 a.a.
NCBI ID   WP_005381322.1    Uniprot ID   A0AAW9BKV9
Organism   Vibrio alginolyticus strain XWV9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2983342..2993935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS14310 (K6806_14200) aroB 2984227..2985327 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  K6806_RS14315 (K6806_14205) aroK 2985360..2985878 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K6806_RS14320 (K6806_14210) pilQ 2986066..2987811 (-) 1746 WP_053307551.1 type IV pilus secretin PilQ family protein Machinery gene
  K6806_RS14325 (K6806_14215) pilP 2987837..2988352 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  K6806_RS14330 (K6806_14220) pilO 2988342..2988935 (-) 594 WP_005381322.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6806_RS14335 (K6806_14225) pilN 2988928..2989503 (-) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  K6806_RS14340 (K6806_14230) pilM 2989487..2990503 (-) 1017 WP_033907304.1 type IV pilus assembly protein PilM Machinery gene
  K6806_RS14345 (K6806_14235) - 2990648..2993209 (+) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23015.53 Da        Isoelectric Point: 5.0885

>NTDB_id=601438 K6806_RS14330 WP_005381322.1 2988342..2988935(-) (pilO) [Vibrio alginolyticus strain XWV9]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=601438 K6806_RS14330 WP_005381322.1 2988342..2988935(-) (pilO) [Vibrio alginolyticus strain XWV9]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTACAGCAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATTGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

87.368

96.447

0.843
  pilO Vibrio cholerae strain A1552

70.681

96.954

0.685