Detailed information NTG0601430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6806_RS13245
• Genome accession: NZ_CP082319
• Coordinates: 2770386..2771372 (-)
• Length: 328 a.a.
• NCBI ID: WP_238952117.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain XWV9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2765386..2776372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6806_RS13230 (K6806_13120)	recA	2765931..2766974 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K6806_RS13235 (K6806_13125)	pncC	2767175..2767657 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K6806_RS13240 (K6806_13130)	mutS	2767742..2770303 (+)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
K6806_RS13245 (K6806_13135)	rpoS	2770386..2771372 (-)	987	WP_238952117.1	RNA polymerase sigma factor RpoS	Regulator
K6806_RS13250 (K6806_13140)	-	2771453..2772376 (-)	924	WP_238952118.1	peptidoglycan DD-metalloendopeptidase family protein	-
K6806_RS13255 (K6806_13145)	-	2772390..2773016 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K6806_RS13260 (K6806_13150)	surE	2773016..2773792 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K6806_RS13265 (K6806_13155)	truD	2773792..2774835 (-)	1044	WP_085570057.1	tRNA pseudouridine(13) synthase TruD	-
K6806_RS13270 (K6806_13160)	ispF	2774881..2775357 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6806_RS13275 (K6806_13165)	ispD	2775372..2776079 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6806_RS13280 (K6806_13170)	ftsB	2776081..2776362 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37458.40 Da
• Isoelectric Point: 4.7299

>NTDB_id=601430 K6806_RS13245 WP_238952117.1 2770386..2771372(-) (rpoS) [Vibrio alginolyticus strain XWV9]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLCLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=601430 K6806_RS13245 WP_238952117.1 2770386..2771372(-) (rpoS) [Vibrio alginolyticus strain XWV9]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCTGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851