Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NC516_RS00020 Genome accession   NZ_CP099485
Coordinates   3141..4268 (+) Length   375 a.a.
NCBI ID   WP_016264313.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS00005 (NC516_00005) dnaA 1..1347 (+) 1347 WP_011373719.1 chromosomal replication initiator protein DnaA -
  NC516_RS00010 (NC516_00010) dnaN 1525..2664 (+) 1140 WP_099960120.1 DNA polymerase III subunit beta -
  NC516_RS00015 (NC516_00015) yaaA 2907..3134 (+) 228 WP_016264312.1 S4 domain-containing protein YaaA -
  NC516_RS00020 (NC516_00020) recF 3141..4268 (+) 1128 WP_016264313.1 DNA replication/repair protein RecF Machinery gene
  NC516_RS00025 (NC516_00025) gyrB 4320..6281 (+) 1962 WP_094365902.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NC516_RS00030 (NC516_00030) gyrA 6329..8902 (+) 2574 WP_016264314.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43222.06 Da        Isoelectric Point: 6.5993

>NTDB_id=601428 NC516_RS00020 WP_016264313.1 3141..4268(+) (recF) [Latilactobacillus sakei strain WiKim0095]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQTREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVTEEQAE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=601428 NC516_RS00020 WP_016264313.1 3141..4268(+) (recF) [Latilactobacillus sakei strain WiKim0095]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCGGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACTTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGCA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGACTTCGCTAAAATTACCGGTTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAACTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCCAAGTTATCACAATA
TATTGGTCAGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCCGCTGTGAGACGTCATT
TCATTGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAACGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCGGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTGGCCCGGCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAAATTCCAGAAGAACAATTAGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAACCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCTCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACAACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACGCCGCGCGTGTTTACAGTCACCAACGGGGTCGTCACAGAAGAACAAG
CAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

56.183

99.2

0.557
  recF Streptococcus pneumoniae R6

48.509

98.4

0.477