Detailed information NTG0601426

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6806_RS13055
• Genome accession: NZ_CP082319
• Coordinates: 2738926..2739795 (+)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio alginolyticus strain XWV9
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2733926..2744795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6806_RS13030 (K6806_12925)	nadC	2734345..2735232 (+)	888	WP_238952113.1	carboxylating nicotinate-nucleotide diphosphorylase	-
K6806_RS13040 (K6806_12930)	-	2735495..2735929 (+)	435	WP_029803401.1	pilin	-
K6806_RS13045 (K6806_12935)	pilB	2735929..2737614 (+)	1686	WP_115386281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6806_RS13050 (K6806_12940)	pilC	2737638..2738861 (+)	1224	WP_025768183.1	type II secretion system F family protein	Machinery gene
K6806_RS13055 (K6806_12945)	pilD	2738926..2739795 (+)	870	WP_025768182.1	A24 family peptidase	Machinery gene
K6806_RS13060 (K6806_12950)	coaE	2739796..2740410 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
K6806_RS13065 (K6806_12955)	zapD	2740438..2741178 (+)	741	WP_005373086.1	cell division protein ZapD	-
K6806_RS13070 (K6806_12960)	yacG	2741337..2741531 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K6806_RS13075 (K6806_12965)	rplS	2741996..2742349 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
K6806_RS13080 (K6806_12970)	trmD	2742391..2743152 (-)	762	WP_017635923.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K6806_RS13085 (K6806_12975)	rimM	2743180..2743728 (-)	549	WP_238952114.1	ribosome maturation factor RimM	-
K6806_RS13090 (K6806_12980)	rpsP	2743758..2744006 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=601426 K6806_RS13055 WP_025768182.1 2738926..2739795(+) (pilD) [Vibrio alginolyticus strain XWV9]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=601426 K6806_RS13055 WP_025768182.1 2738926..2739795(+) (pilD) [Vibrio alginolyticus strain XWV9]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46