Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NF669_RS10085 Genome accession   NZ_CP098924
Coordinates   2315419..2317218 (+) Length   599 a.a.
NCBI ID   WP_301557545.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain yellow     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2310419..2322218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF669_RS10060 (NF669_10040) - 2310930..2311181 (-) 252 WP_077492688.1 hypothetical protein -
  NF669_RS10065 (NF669_10045) - 2311183..2312766 (-) 1584 WP_301557096.1 hypothetical protein -
  NF669_RS10070 (NF669_10050) - 2313098..2313235 (-) 138 WP_237073582.1 DUF1661 domain-containing protein -
  NF669_RS10075 (NF669_10055) - 2313216..2313308 (+) 93 WP_130262605.1 DUF1661 domain-containing protein -
  NF669_RS10080 (NF669_10060) mnmG 2313508..2315385 (+) 1878 WP_301557097.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  NF669_RS10085 (NF669_10065) uvrC 2315419..2317218 (+) 1800 WP_301557545.1 excinuclease ABC subunit UvrC Machinery gene
  NF669_RS10090 (NF669_10070) dtd 2317225..2317677 (+) 453 WP_004583644.1 D-aminoacyl-tRNA deacylase -
  NF669_RS10095 (NF669_10075) - 2317682..2318032 (+) 351 WP_005874921.1 nucleotide pyrophosphohydrolase -
  NF669_RS10100 (NF669_10080) deoC 2318019..2318888 (+) 870 WP_097637930.1 deoxyribose-phosphate aldolase -
  NF669_RS10105 (NF669_10085) - 2318929..2319090 (+) 162 WP_165384062.1 hypothetical protein -
  NF669_RS10110 (NF669_10090) - 2319199..2320173 (-) 975 WP_301557098.1 polyprenyl synthetase family protein -
  NF669_RS10115 (NF669_10095) - 2320231..2320869 (-) 639 WP_012458629.1 WbqC family protein -
  NF669_RS10120 (NF669_10100) lepB 2320890..2321516 (-) 627 WP_021662709.1 signal peptidase I -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69761.38 Da        Isoelectric Point: 9.6208

>NTDB_id=601392 NF669_RS10085 WP_301557545.1 2315419..2317218(+) (uvrC) [Porphyromonas gingivalis strain yellow]
MTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLE
NSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAQGMLRLVKEIYPIRTCKLDLREE
KIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEGLRFEEAQICKERIELLE
RYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVL
PFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSN
IQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYSRLTEEDLPLPDLIVVDGGKGQLSAAYETLDK
LGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKE
DLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=601392 NF669_RS10085 WP_301557545.1 2315419..2317218(+) (uvrC) [Porphyromonas gingivalis strain yellow]
ATGACCCGCGACGAACTGAACATCATCCTCCCTACCCTGCCGGAAAAACCGGGTTGCTACCAGTACTTCGATGAAGATGG
GAAGGTAATCTATGTAGGCAAGGCCAAAAACCTTCGGCGCAGGGTCAGTTCGTATTTTTACAAGGAGCACGCGGACAGGA
AGACCCGCATACTGGTCAGACAGATCAGGAGTATCAAATACATCGTTGTGGACAGCGAAGGGGATGCCCTGCTGCTCGAA
AACTCACTGATCAAGGAGTATCAACCTCGGTATAATGTCCTCCTCAAAGATGGGAAGACATACCCCAGCATAGTGATCAA
ACGGGAACCTTTCCCACGTATATTCGCCACACGGGACATCAAAAAGGACGGATCCGAATACTTCGGCCCCTATCCGGGCG
CACTCATTGCCCAAGGGATGCTCCGCCTTGTGAAAGAGATCTACCCGATCCGCACCTGCAAACTGGATCTGAGAGAGGAG
AAAATCCGACAAGGACGGTACCGCGTCTGCCTGCAGTATCACATCAAGAAATGCAAAGGCCCCTGCATCGGCAATCAAAC
TTCGAACGAGTACGAAAGCAATGTATCGGAAATACGCGATCTGCTCCGAGGCAACTTGCACAGACTTGTACGCATGTATC
GCGACAGGATGCAGGCATACAGCGAAGGACTGCGCTTCGAAGAGGCACAGATATGCAAGGAGAGAATAGAGCTTCTTGAG
CGATACGAAGCCAAGCATACGGTCGTACCGCGTAATATAGACAACGTAGATGTTTTCTCTTACGACGAAGACGAGCACAC
GGCCTATATCAACTACATGCACATAGAGCACGGAGGGATCAATCGTGTGTACACCTTGGAGTACAGAAAGCAGATAGAGG
AATCGAAAGAAGAACTTCTTGCAGCGGCGATAACAGAGCTGAGACAAAGATTCGAAAGCAACGCTCACGAAATCGTTTTG
CCGTTCGACACCGGTTGGCAAACGGGAGAGAGCATCACGACTACGATCCCCCGACGTGGAGACAAACGGAAACTGCTGGA
ATTATCCGAGAAGAACGTAGCTCAATACAAGCTCGACAAACTCAAACGTGCCGAGAAGCTCAATCCCGAGCAACGCGCCC
TACATATCGTCCACGGGATCCAAAAGGATTTGCACTTGGATCGTCCGCCGAAACATATCGAATGCTTCGACAACTCGAAT
ATACAGGGTACGAGTCCGGTGGCAGCCTGCGTTGTTTTCAAAATGGGGAAACCGAGCAAAAAGGATTACCGAAAGTTTCA
CGTGAAAACAGTCGAAGGGCCGAACGACTTCGCCTCCATGAGAGAAATCATCAGTCGGCATTACTCCCGCCTGACGGAAG
AGGACTTACCCCTACCCGACCTAATCGTTGTAGATGGAGGGAAAGGACAGCTTAGCGCAGCGTACGAAACATTAGATAAA
CTGGGGCTCATCGGCAAGATACCCATCATAGGATTGGCCGAACGTCTGGAGGAAATCTTTTTCCCGAAGGATCCCGTTCC
GCTGATTTTGGACAAGAAAAGCGAAACGCTCAAGGTCATACAACACCTACGCGACGAAGCACACCGCTTCGGGATCGGGT
TCCACCGCGATGTACGAAGTAAGAAACAAATTCAGAGCGAACTGGACAATATCAAAGGCATCGGTAAGAAAACAAAAGAA
GATCTGCTCCGCCATTTCAAAAGCGTAAAGCGAATACGCTCCGCAGAAGAGGAAGAGCTTAGTGCTCTTATCGGCCGGAA
CAAAGCGAAACTATTATACGAAGGACTCAGAAAGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(547-598)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-532)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae D39

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae TIGR4

38.2

98.331

0.376