Detailed information NTG0601374

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6754_RS02900
• Genome accession: NZ_CP082317
• Coordinates: 597539..598408 (-)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio alginolyticus strain SXV3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 592539..603408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6754_RS02865 (K6754_02865)	rpsP	593480..593728 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
K6754_RS02870 (K6754_02870)	rimM	593758..594306 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
K6754_RS02875 (K6754_02875)	trmD	594334..595095 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K6754_RS02880 (K6754_02880)	rplS	595137..595490 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
K6754_RS02885 (K6754_02885)	yacG	595803..595997 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K6754_RS02890 (K6754_02890)	zapD	596156..596896 (-)	741	WP_005373086.1	cell division protein ZapD	-
K6754_RS02895 (K6754_02895)	coaE	596924..597538 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
K6754_RS02900 (K6754_02900)	pilD	597539..598408 (-)	870	WP_025768182.1	prepilin peptidase	Machinery gene
K6754_RS02905 (K6754_02905)	pilC	598473..599696 (-)	1224	WP_025768183.1	type II secretion system F family protein	Machinery gene
K6754_RS02910 (K6754_02910)	pilB	599720..601405 (-)	1686	WP_115386281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6754_RS02915 (K6754_02915)	-	601405..601839 (-)	435	WP_029803401.1	type IV pilin protein	-
K6754_RS02925 (K6754_02920)	nadC	602102..602989 (-)	888	WP_238952113.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=601374 K6754_RS02900 WP_025768182.1 597539..598408(-) (pilD) [Vibrio alginolyticus strain SXV3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=601374 K6754_RS02900 WP_025768182.1 597539..598408(-) (pilD) [Vibrio alginolyticus strain SXV3]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46