Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NF669_RS03500 Genome accession   NZ_CP098924
Coordinates   822808..823431 (+) Length   207 a.a.
NCBI ID   WP_012458238.1    Uniprot ID   B2RKL4
Organism   Porphyromonas gingivalis strain yellow     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817808..828431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF669_RS03485 (NF669_03480) nrdG 820095..820586 (+) 492 WP_004584586.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  NF669_RS03490 (NF669_03485) - 820698..820976 (+) 279 WP_004584585.1 HU family DNA-binding protein -
  NF669_RS03495 (NF669_03490) - 821297..822811 (+) 1515 WP_004584583.1 Rne/Rng family ribonuclease -
  NF669_RS03500 (NF669_03495) recR 822808..823431 (+) 624 WP_012458238.1 recombination mediator RecR Machinery gene
  NF669_RS03505 (NF669_03500) - 823438..823965 (+) 528 WP_021662287.1 GNAT family N-acetyltransferase -
  NF669_RS03510 (NF669_03505) ligA 823953..825962 (+) 2010 WP_301557378.1 NAD-dependent DNA ligase LigA -
  NF669_RS03515 (NF669_03510) - 825975..827210 (+) 1236 WP_004584579.1 ABC transporter permease -
  NF669_RS03520 (NF669_03515) - 827375..827794 (-) 420 WP_301557379.1 hypothetical protein -
  NF669_RS03525 (NF669_03520) - 828031..828204 (-) 174 WP_230456085.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23017.34 Da        Isoelectric Point: 6.0053

>NTDB_id=601372 NF669_RS03500 WP_012458238.1 822808..823431(+) (recR) [Porphyromonas gingivalis strain yellow]
MIQKYPSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRRCHNISDSGVCTICADPTR
DQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLF
RKLESTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=601372 NF669_RS03500 WP_012458238.1 822808..823431(+) (recR) [Porphyromonas gingivalis strain yellow]
ATGATACAGAAATATCCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCTACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCGCTGTCATAATATCAGTGATTCCGGTGTTTGTACTATCTGTGCAGACCCCACTCGG
GATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTA
TCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAG
TAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGTCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(43-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RKL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

96.135

0.464
  recR Streptococcus pneumoniae R6

45.685

95.169

0.435
  recR Bacillus subtilis subsp. subtilis str. 168

43.434

95.652

0.415