Detailed information NTG0601370

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6754_RS02715
• Genome accession: NZ_CP082317
• Coordinates: 566237..567226 (+)
• Length: 329 a.a.
• NCBI ID: WP_213972539.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain SXV3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 561237..572226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6754_RS02680 (K6754_02680)	ftsB	561247..561528 (+)	282	WP_005380907.1	cell division protein FtsB	-
K6754_RS02685 (K6754_02685)	ispD	561530..562237 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6754_RS02690 (K6754_02690)	ispF	562252..562728 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6754_RS02695 (K6754_02695)	truD	562774..563817 (+)	1044	WP_154205036.1	tRNA pseudouridine(13) synthase TruD	-
K6754_RS02700 (K6754_02700)	surE	563817..564593 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K6754_RS02705 (K6754_02705)	-	564593..565219 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K6754_RS02710 (K6754_02710)	-	565233..566156 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
K6754_RS02715 (K6754_02715)	rpoS	566237..567226 (+)	990	WP_213972539.1	RNA polymerase sigma factor RpoS	Regulator
K6754_RS02720 (K6754_02720)	mutS	567309..569870 (-)	2562	WP_213891984.1	DNA mismatch repair protein MutS	-
K6754_RS02725 (K6754_02725)	pncC	569955..570437 (+)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
K6754_RS02730 (K6754_02730)	recA	570638..571681 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37541.43 Da
• Isoelectric Point: 4.6899

>NTDB_id=601370 K6754_RS02715 WP_213972539.1 566237..567226(+) (rpoS) [Vibrio alginolyticus strain SXV3]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=601370 K6754_RS02715 WP_213972539.1 566237..567226(+) (rpoS) [Vibrio alginolyticus strain SXV3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTA
CGTGGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAA
CCGTGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAAC
GTGGTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACG
ATCCGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
CGAACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGC
GTATTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCT
GATCCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAA
AGAAGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGA
CACGTGAACGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATG
GAAAACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.582	100	0.851