Detailed information NTG0601242

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6749_RS12795
• Genome accession: NZ_CP082310
• Coordinates: 2759551..2760537 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain HYV1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2754551..2765537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6749_RS12780 (K6749_12700)	recA	2755096..2756139 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K6749_RS12785 (K6749_12705)	pncC	2756340..2756822 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K6749_RS12790 (K6749_12710)	mutS	2756907..2759468 (+)	2562	WP_104979687.1	DNA mismatch repair protein MutS	-
K6749_RS12795 (K6749_12715)	rpoS	2759551..2760537 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K6749_RS12800 (K6749_12720)	-	2760618..2761541 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
K6749_RS12805 (K6749_12725)	-	2761555..2762181 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K6749_RS12810 (K6749_12730)	surE	2762181..2762957 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K6749_RS12815 (K6749_12735)	truD	2762957..2764000 (-)	1044	WP_238970101.1	tRNA pseudouridine(13) synthase TruD	-
K6749_RS12820 (K6749_12740)	ispF	2764046..2764522 (-)	477	WP_054866498.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6749_RS12825 (K6749_12745)	ispD	2764537..2765244 (-)	708	WP_054701898.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6749_RS12830 (K6749_12750)	ftsB	2765246..2765527 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=601242 K6749_RS12795 WP_005380887.1 2759551..2760537(-) (rpoS) [Vibrio alginolyticus strain HYV1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=601242 K6749_RS12795 WP_005380887.1 2759551..2760537(-) (rpoS) [Vibrio alginolyticus strain HYV1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854