Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NE421_RS08820 Genome accession   NZ_CP098791
Coordinates   1840871..1841506 (+) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 280820     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835871..1846506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS08795 (NE421_08795) - 1836711..1837724 (+) 1014 WP_001096098.1 phosphotransferase -
  NE421_RS08800 (NE421_08800) murU 1837724..1838413 (+) 690 WP_004738901.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NE421_RS08805 (NE421_08805) rsmG 1838501..1839133 (+) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NE421_RS08810 (NE421_08810) - 1839155..1839937 (+) 783 WP_000057212.1 ParA family protein -
  NE421_RS08815 (NE421_08815) - 1839934..1840821 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  NE421_RS08820 (NE421_08820) exbB 1840871..1841506 (+) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NE421_RS08825 (NE421_08825) - 1841522..1841950 (+) 429 WP_000669680.1 biopolymer transporter ExbD -
  NE421_RS08830 (NE421_08830) msbA 1841947..1843674 (+) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  NE421_RS08835 (NE421_08835) lpxK 1843677..1844687 (+) 1011 WP_000050451.1 tetraacyldisaccharide 4'-kinase -
  NE421_RS08840 (NE421_08840) kdsB 1844698..1845459 (+) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NE421_RS08845 (NE421_08845) - 1845471..1846451 (+) 981 WP_252172179.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=601240 NE421_RS08820 WP_000264042.1 1840871..1841506(+) (exbB) [Acinetobacter baumannii strain 280820]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=601240 NE421_RS08820 WP_000264042.1 1840871..1841506(+) (exbB) [Acinetobacter baumannii strain 280820]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393