Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NEH83_RS20315 Genome accession   NZ_CP098783
Coordinates   4604810..4605409 (+) Length   199 a.a.
NCBI ID   WP_030086971.1    Uniprot ID   A0ABW2MPF7
Organism   Streptomyces sp. JUS-F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4599810..4610409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS20290 (NEH83_20320) - 4600070..4601452 (+) 1383 WP_086779905.1 aspartate aminotransferase family protein -
  NEH83_RS20295 (NEH83_20325) - 4601623..4602342 (+) 720 WP_086779906.1 GntR family transcriptional regulator -
  NEH83_RS20300 (NEH83_20330) - 4602402..4603052 (+) 651 Protein_4000 hypothetical protein -
  NEH83_RS20305 (NEH83_20335) - 4603229..4604032 (-) 804 WP_030086970.1 SLATT domain-containing protein -
  NEH83_RS20310 (NEH83_20340) - 4604354..4604698 (+) 345 WP_003967515.1 YbaB/EbfC family nucleoid-associated protein -
  NEH83_RS20315 (NEH83_20345) recR 4604810..4605409 (+) 600 WP_030086971.1 recombination mediator RecR Machinery gene
  NEH83_RS20320 (NEH83_20350) - 4605493..4606152 (+) 660 WP_030086974.1 DUF5063 domain-containing protein -
  NEH83_RS20325 (NEH83_20355) - 4606234..4607079 (-) 846 WP_218785947.1 SDR family oxidoreductase -
  NEH83_RS20330 (NEH83_20360) - 4607503..4608462 (+) 960 WP_302213857.1 hypothetical protein -
  NEH83_RS20335 (NEH83_20365) - 4608587..4609120 (+) 534 WP_030086980.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21787.08 Da        Isoelectric Point: 5.1558

>NTDB_id=601079 NEH83_RS20315 WP_030086971.1 4604810..4605409(+) (recR) [Streptomyces sp. JUS-F4]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCGICRDARRDQSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=601079 NEH83_RS20315 WP_030086971.1 4604810..4605409(+) (recR) [Streptomyces sp. JUS-F4]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACGGACGTACGCCGGCTCGCGCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCCGTGTGCGGCAATGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGGGACGCGCGCCGCGACCAGAGCGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACCGACCCCAATCTGGAGGGCGAGGCCACCGCCACCTACCTGGCGCGGATGGTCAAG
CCCATGGGCCTCAAGGTGACCCGGCTGGCCAGCGGTCTGCCGGTCGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457