Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K7B13_RS02000 Genome accession   NZ_CP082278
Coordinates   424264..425217 (+) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus amyloliquefaciens strain 35M     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419264..430217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS01975 (K7B13_01975) - 419294..420721 (+) 1428 WP_212100309.1 HAMP domain-containing sensor histidine kinase -
  K7B13_RS01980 (K7B13_01980) rapC 420881..422029 (+) 1149 WP_065980700.1 tetratricopeptide repeat protein Regulator
  K7B13_RS01985 (K7B13_01985) phrC 422013..422132 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  K7B13_RS01990 (K7B13_01990) - 422280..422390 (-) 111 WP_065980701.1 YjcZ family sporulation protein -
  K7B13_RS01995 (K7B13_01995) - 422485..423849 (-) 1365 WP_065980702.1 aspartate kinase -
  K7B13_RS02000 (K7B13_02000) ceuB 424264..425217 (+) 954 WP_013351008.1 ABC transporter permease Machinery gene
  K7B13_RS02005 (K7B13_02005) - 425207..426154 (+) 948 WP_065980704.1 iron chelate uptake ABC transporter family permease subunit -
  K7B13_RS02010 (K7B13_02010) - 426148..426906 (+) 759 WP_065980705.1 ABC transporter ATP-binding protein -
  K7B13_RS02015 (K7B13_02015) - 426928..427872 (+) 945 WP_212100310.1 siderophore ABC transporter substrate-binding protein -
  K7B13_RS02020 (K7B13_02020) - 427913..429337 (-) 1425 WP_014469749.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=600834 K7B13_RS02000 WP_013351008.1 424264..425217(+) (ceuB) [Bacillus amyloliquefaciens strain 35M]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=600834 K7B13_RS02000 WP_013351008.1 424264..425217(+) (ceuB) [Bacillus amyloliquefaciens strain 35M]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
CATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGCTACGAGCTTTTATACTTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCTGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATCGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533