Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K7B13_RS01800 Genome accession   NZ_CP082278
Coordinates   362982..363419 (-) Length   145 a.a.
NCBI ID   WP_212100261.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357982..368419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS01775 (K7B13_01775) - 359000..360136 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  K7B13_RS01780 (K7B13_01780) - 360151..360585 (+) 435 WP_013350964.1 RDD family protein -
  K7B13_RS01785 (K7B13_01785) - 360658..360981 (+) 324 WP_212100253.1 YckD family protein -
  K7B13_RS01790 (K7B13_01790) - 361086..362522 (+) 1437 WP_212100256.1 glycoside hydrolase family 1 protein -
  K7B13_RS01795 (K7B13_01795) nin/comJ 362563..362961 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  K7B13_RS01800 (K7B13_01800) nucA/comI 362982..363419 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K7B13_RS01805 (K7B13_01805) hxlB 363769..364326 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  K7B13_RS01810 (K7B13_01810) hxlA 364323..364958 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  K7B13_RS01815 (K7B13_01815) - 365190..365552 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=600831 K7B13_RS01800 WP_212100261.1 362982..363419(-) (nucA/comI) [Bacillus amyloliquefaciens strain 35M]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKLILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=600831 K7B13_RS01800 WP_212100261.1 362982..363419(-) (nucA/comI) [Bacillus amyloliquefaciens strain 35M]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGTTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641