Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   K7B13_RS01795 Genome accession   NZ_CP082278
Coordinates   362563..362961 (-) Length   132 a.a.
NCBI ID   WP_212100259.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357563..367961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS01770 (K7B13_01770) - 357734..358936 (+) 1203 WP_212100250.1 GTP-binding protein -
  K7B13_RS01775 (K7B13_01775) - 359000..360136 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  K7B13_RS01780 (K7B13_01780) - 360151..360585 (+) 435 WP_013350964.1 RDD family protein -
  K7B13_RS01785 (K7B13_01785) - 360658..360981 (+) 324 WP_212100253.1 YckD family protein -
  K7B13_RS01790 (K7B13_01790) - 361086..362522 (+) 1437 WP_212100256.1 glycoside hydrolase family 1 protein -
  K7B13_RS01795 (K7B13_01795) nin/comJ 362563..362961 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  K7B13_RS01800 (K7B13_01800) nucA/comI 362982..363419 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K7B13_RS01805 (K7B13_01805) hxlB 363769..364326 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  K7B13_RS01810 (K7B13_01810) hxlA 364323..364958 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  K7B13_RS01815 (K7B13_01815) - 365190..365552 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14912.89 Da        Isoelectric Point: 4.4508

>NTDB_id=600830 K7B13_RS01795 WP_212100259.1 362563..362961(-) (nin/comJ) [Bacillus amyloliquefaciens strain 35M]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNAKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=600830 K7B13_RS01795 WP_212100259.1 362563..362961(-) (nin/comJ) [Bacillus amyloliquefaciens strain 35M]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATTTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATGCGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAACGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATCGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758