Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K6I41_RS17920 Genome accession   NZ_CP082274
Coordinates   3778282..3779850 (+) Length   522 a.a.
NCBI ID   WP_198308288.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3773282..3784850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17900 (K6I41_17775) - 3773775..3775076 (+) 1302 WP_005301642.1 homoserine dehydrogenase -
  K6I41_RS17905 (K6I41_17780) thrC 3775131..3776270 (+) 1140 WP_004795157.1 threonine synthase -
  K6I41_RS17910 (K6I41_17785) pbpG 3776377..3777423 (-) 1047 WP_147306163.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  K6I41_RS17915 (K6I41_17790) - 3777636..3778271 (+) 636 WP_003654436.1 response regulator -
  K6I41_RS17920 (K6I41_17795) pilS 3778282..3779850 (+) 1569 WP_198308288.1 PAS domain-containing sensor histidine kinase Regulator
  K6I41_RS17925 (K6I41_17800) pilR 3779874..3781292 (+) 1419 WP_250374883.1 sigma-54 dependent transcriptional regulator Regulator
  K6I41_RS17930 (K6I41_17805) - 3781295..3782479 (-) 1185 WP_151989359.1 S41 family peptidase -
  K6I41_RS17935 (K6I41_17810) gpmI 3782495..3784042 (-) 1548 WP_250374884.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59083.66 Da        Isoelectric Point: 6.3667

>NTDB_id=600778 K6I41_RS17920 WP_198308288.1 3778282..3779850(+) (pilS) [Acinetobacter sp. AS23]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPSLYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTYPIQIELNNFIKTLLDEDLLDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=600778 K6I41_RS17920 WP_198308288.1 3778282..3779850(+) (pilS) [Acinetobacter sp. AS23]
ATGCAATTTCCCTTAAACTCATCGTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCTTCTTTATATTCTT
ATACCCTGCTCGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACCAAACAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGCCTGAGCTTACTTACATTTTCTGTAGGTGAACCAAATCTACAACTCAG
CTTGCTGTATGTTATTGCTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCTG
TCATTGCCGTTATTTACCAACGTTTTGTTGGTAGTTTGTTTGACTACAATAATCTAAATACGATTGGTAATAGTGCCTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGCATTGGGCAAATTGCGGTACAGCGCTTTAAACTACTTGAAGCACTGACTTT
CCACCAATCCATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGCTATTTGGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAATCCGGCTGCCTGCTCTCTGTTAGGGATTCCTCCTCAATTTGCTAGTGAA
AAATACCCTTTAGCGAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTGCAAGAAGGCGATCGATTTAT
TTTTGAGTCTCGGCTGTCGGCGTATTCTATTAATATTAAAGTGCAACATCTTGTGGTGCCACAACAAGCATTGACACTAC
TCATCTTACAAGATGCACAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCCTTAGGGCAACTTTCAGCCAGC
ATTGCACATGAAATCCGTAATCCCCTAGCAGCCATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTTAGAACAGCA
AAATACTTTACGTCGTATGATTGGTAAGCAAACAAAGCGCATCGATAGTATTGTTCAAGATACATTAGGACTGGCCAGCA
GCGAAAGAACTTACCCAATCCAGATTGAATTAAACAATTTCATAAAGACGTTATTAGACGAAGATCTTTTAGATGTTAAA
CATTCTATACAGCTTAAAATTTCCGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTTAGGCAGGTGCTCATTAA
CCTTGTCAGAAATGCTTTACGACATAATGCACCCGATTCACCCCATGTTCTGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-255)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935