Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   K6I41_RS10365 Genome accession   NZ_CP082274
Coordinates   2223413..2223793 (-) Length   126 a.a.
NCBI ID   WP_250374250.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218413..2228793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS10335 (K6I41_10260) tadA 2218478..2218981 (-) 504 WP_004792719.1 tRNA adenosine(34) deaminase TadA -
  K6I41_RS10340 (K6I41_10265) - 2218986..2220110 (-) 1125 WP_111853773.1 enoyl-CoA hydratase/isomerase family protein -
  K6I41_RS10345 (K6I41_10270) ung 2220107..2220820 (-) 714 WP_250374247.1 uracil-DNA glycosylase -
  K6I41_RS10350 (K6I41_10275) - 2220874..2221470 (-) 597 WP_004792725.1 6-carboxytetrahydropterin synthase -
  K6I41_RS10355 (K6I41_10280) gspK 2221699..2222658 (-) 960 WP_250374248.1 type II secretion system minor pseudopilin GspK -
  K6I41_RS10360 (K6I41_10285) xcpW 2222658..2223413 (-) 756 WP_250374249.1 type II secretion system minor pseudopilin GspJ Machinery gene
  K6I41_RS10365 (K6I41_10290) xcpV 2223413..2223793 (-) 381 WP_250374250.1 type II secretion system minor pseudopilin GspI Machinery gene
  K6I41_RS10370 (K6I41_10295) - 2223783..2224337 (-) 555 WP_005304714.1 type II secretion system protein -
  K6I41_RS10375 (K6I41_10300) - 2224347..2224955 (-) 609 WP_013198082.1 TetR/AcrR family transcriptional regulator -
  K6I41_RS10380 (K6I41_10305) - 2224992..2225765 (-) 774 WP_250374251.1 TatD family hydrolase -
  K6I41_RS10385 (K6I41_10310) - 2225783..2226124 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  K6I41_RS10390 (K6I41_10315) - 2226135..2227115 (-) 981 WP_250374252.1 DNA polymerase III subunit delta' -
  K6I41_RS10395 (K6I41_10320) kdsB 2227129..2227890 (-) 762 WP_199942173.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13960.17 Da        Isoelectric Point: 9.4463

>NTDB_id=600761 K6I41_RS10365 WP_250374250.1 2223413..2223793(-) (xcpV) [Acinetobacter sp. AS23]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGEIWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=600761 K6I41_RS10365 WP_250374250.1 2223413..2223793(-) (xcpV) [Acinetobacter sp. AS23]
ATGAAATCTAAAGGCTTTACTCTATTAGAGGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCCGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CCTTAATGGAGATAAATCAAGAGTGGCTTCAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGTGAAATCTGGCAGATT
GATAAATCTGCTGAATCTACAGTCAGCCCTAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

92.857

100

0.929