Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K6I41_RS02055 Genome accession   NZ_CP082274
Coordinates   434003..434632 (-) Length   209 a.a.
NCBI ID   WP_199945146.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429003..439632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS02020 (K6I41_02015) mlaE 429330..430109 (+) 780 WP_005301186.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  K6I41_RS02025 (K6I41_02020) - 430109..430792 (+) 684 WP_005301188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  K6I41_RS02030 (K6I41_02025) - 430819..431460 (+) 642 WP_049837391.1 ABC transporter substrate-binding protein -
  K6I41_RS02035 (K6I41_02030) - 431471..431758 (+) 288 WP_192836303.1 STAS domain-containing protein -
  K6I41_RS02040 (K6I41_02035) - 431831..432844 (-) 1014 WP_004789661.1 CorA family divalent cation transporter -
  K6I41_RS02045 (K6I41_02040) - 433003..433584 (+) 582 WP_004789659.1 TIGR00730 family Rossman fold protein -
  K6I41_RS02050 (K6I41_02045) - 433599..433997 (+) 399 WP_016140094.1 NUDIX domain-containing protein -
  K6I41_RS02055 (K6I41_02050) comF 434003..434632 (-) 630 WP_199945146.1 phosphoribosyltransferase family protein Machinery gene
  K6I41_RS02060 (K6I41_02055) recG 434625..436670 (-) 2046 WP_004789653.1 ATP-dependent DNA helicase RecG -
  K6I41_RS02065 (K6I41_02060) - 436691..437518 (+) 828 WP_250375125.1 NAD-dependent epimerase/dehydratase family protein -
  K6I41_RS02070 (K6I41_02065) - 437586..438569 (+) 984 WP_151826563.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24214.37 Da        Isoelectric Point: 9.2182

>NTDB_id=600752 K6I41_RS02055 WP_199945146.1 434003..434632(-) (comF) [Acinetobacter sp. AS23]
MFSFLNPQHLIQLLSPCLLCESDVREKYSLCKDCWKQLPWLKQTIQRNDQSVLVACEYAYPVSRIIQQFKYEQKLHYEIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
SQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=600752 K6I41_RS02055 WP_199945146.1 434003..434632(-) (comF) [Acinetobacter sp. AS23]
ATGTTTAGTTTCTTAAACCCACAGCATCTTATTCAATTACTCTCACCTTGCTTGTTATGTGAGTCAGATGTACGTGAAAA
ATATTCGCTATGTAAGGACTGTTGGAAGCAGTTACCTTGGCTTAAACAAACAATTCAACGCAATGATCAATCAGTTCTTG
TGGCCTGTGAGTATGCTTATCCAGTTAGCCGGATCATTCAGCAGTTTAAATATGAACAGAAATTACATTATGAAATTTTG
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAGGCTATTGTTCCTATGCCTATTTCCAATCAACGTTTAAT
CGAACGTGGTTTTAATCAGTCATTGTTACTTGCAAACATCTTAAGCAAACAATTAAAAATACCTGTTTGGCAGCCAGTAC
AACGTCTTGCTGAACATTCGCAAAAAGGGCTTTCTCGACTTGAACGCTTTGAGAACATTGAACAACAGTTTATTGCGCTT
TCTCAAGAAAAACGGCGTTATCGCCGTGTTCTTATTATTGATGATGTAATAACCACTGGAAGCTCTATTCATGCGCTCAG
TCAAGCACTTAAACAATTAGGCTGCACATCTATCTATGCCGCTTGTCTAGCGGCAACTCTGACCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

87.081

100

0.871
  comF Acinetobacter baumannii D1279779

86.124

100

0.861